| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_1480 |
|---|
| Symbol | ampC |
|---|
| ID | 5832915 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | - |
|---|
| Start bp | 1658857 |
|---|
| End bp | 1660020 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641367280 |
|---|
| Product | beta-lactamase |
|---|
| Protein accession | YP_001638952 |
|---|
| Protein GI | 163850909 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0394716 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAAAGC GCGCGCTGGC CGCCCTCGTC CTGAGCGGCT TACCGCTGCT CCCGACGCCC
GCTCTGGCCA CCGATCCATC GGGGCGGGTC GCCGCCGCGG TCGAGCAGGC CTACCGCCCG
CTCCTGAAGG CCTACGACGT GCCCGGCATC GCCGTCGCCG TGACGCGAGA GGGGCATTCC
ACCGTCTTCA CCTTCGGGCT CGCCGACCGG GAGCGGCAGC GGCCGGTAAC GCGCGACACG
CTGTTCGAGA TCGGCTCGGT CAGCAAGACC TTCACGGCGA CGCTCGTCTC CTACGCGCAG
GGACTCGGCC GGCTCTCGCT CGATGATGCG CCGAGCCGGT TCCTGCCGTC GCTGCGGGGC
AGCGCGCTCG ATCGCGTCAG CCTGCTCGAT CTCGGCACCT ACAGCGCGGG CGGCCTGCCG
CTGCAGTTTC CCGATGCGGT GGCCGACGAG GCAGCGATGA TCGCCTACTT TCGCCGCTGG
CAACCTTCCG CGCCGCCTGG AACGCAGAGG CTCTATTCCA ATCCCAGCCT CGGCCTGTTC
GGAGCCGCCG CCGCTGCGGC CATGGGCGGC GACTTCGCCG AGCTGATGGA AACCCGGCTG
TTTCCGGGGC TCGGCCTGAA GCACAGCTTC ATCCGCGTGC CGGCGTCAGA GAGCGAGCGC
TACGCCTGGG GCTACGGCCG GGACGGCGCG CCGATCCGGG TCAATCCGGG CGTCCTCGAC
GGGGAAGCCT ACGGCGTCAA ATCCAGCGCC GCCGACATGA TCCTCTTCGT CGAGGCCCAT
CTCGACCCCA CTCGCCTCGA CCCGCCGATG CGGCAGGCGG TTCAGGGCAC GCAGATCGGG
TATTTCAGGG TCGGCGCGAT GGTGCAGGGG CTCGGCTGGG AGCAGTTTCC CTATCCGATC
TCGCTGGAGC GCCTTCAGGC CGGCAATGCC GAGCCGATGC GGTTCGAGGC GCAACCCGCC
GCGCGGCTCG ACCCGCCGCA GAGGCCGACA GGGGTCACGC TGTTCGACAA GACCGGCTCC
ACCAACGGCT TTGGCGCCTA TGTCGCCTTC GTGCCGGCCA AACGCATCGG CCTCGTCATG
CTGGCCAACC GCGCCTTTCC GATGCCGGCG CGCATCGCGG CGGCGCACGC GGTGCTGGAG
GCGTTGGCAG CCGAGGAGCC CTGA
|
|---|
| Protein sequence | MRKRALAALV LSGLPLLPTP ALATDPSGRV AAAVEQAYRP LLKAYDVPGI AVAVTREGHS
TVFTFGLADR ERQRPVTRDT LFEIGSVSKT FTATLVSYAQ GLGRLSLDDA PSRFLPSLRG
SALDRVSLLD LGTYSAGGLP LQFPDAVADE AAMIAYFRRW QPSAPPGTQR LYSNPSLGLF
GAAAAAAMGG DFAELMETRL FPGLGLKHSF IRVPASESER YAWGYGRDGA PIRVNPGVLD
GEAYGVKSSA ADMILFVEAH LDPTRLDPPM RQAVQGTQIG YFRVGAMVQG LGWEQFPYPI
SLERLQAGNA EPMRFEAQPA ARLDPPQRPT GVTLFDKTGS TNGFGAYVAF VPAKRIGLVM
LANRAFPMPA RIAAAHAVLE ALAAEEP
|
|---|
| |