| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_1406 |
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| Symbol | |
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| ID | 5833094 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium extorquens PA1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010172 |
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| Strand | - |
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| Start bp | 1580103 |
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| End bp | 1582103 |
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| Gene Length | 2001 bp |
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| Protein Length | 666 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641367206 |
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| Product | cytochrome c assembly protein |
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| Protein accession | YP_001638878 |
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| Protein GI | 163850835 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.419457 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0330583 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATCGTCG AGATTGGCCA TTACGCTCTG GCGCTCGCGC TGGCGCTCTC CCTGGTGCAG
GCGGTGATGC CCGCCTGGGC CGCCCGCTCG GGCGACGCGG CTTTGCGCGA GGTGGCGGGG
CCCGCCGCGC TCGGCACCTT CGCCTGCATC CTGTTCGCCT TCTGCGCGCT GACCTACGCG
CACGTGACGT CGGACTTCTC GGTCCAGAAC GTCGTCGAGA ACTCGCACAC CGCTAAGCCC
TTGATCTACA AGATCTCCGG CGTGTGGGGG AACCATGAGG GCTCGATGCT CCTCTGGGTG
CTGATCCTCG CGTTGTTCGG CGCCTGGGTC GCCACCGCCA AGACCTCCGT GCCGCCGGTG
CTGCGCACCA ACACGCTGAT GGTGCAGGCG AGCGTCACCT TCGTGTTCGT GCTGTTCATC
ATCACGACCT CGAACCCGTT CGCCCGCGTC GCCCCGGCGC CGCTGGAGGG CAACGACCTC
AACCCGCTGC TGCAGGATTT CGGCCTCGCG ATCCATCCGC CGCTGCTCTA CCTCGGCTAT
GTCGGCTTCT CCGTCACCTT CGCCTTCGCC GTCGCCGCCC TGATCGAGGG GCGCATCGAT
GCCGTCTGGG CGCGGGCGGT GCGGCCCTGG GCCCTGATCG CCTGGAGCTT CCTGACACTC
GGCATCGCCA TGGGTTCGTA CTGGGCCTAT TACGAACTCG GCTGGGGCGG CTGGTGGTTC
TGGGACCCGG TCGAGAATGC CTCGCTGATG CCCTGGATCG CCGGCACGGC GCTCTTGCAC
TCCATCGTCG TCATGGAGAA GCGCGACGCG CTCAAGGTCT GGACGGTCCT ACTCGCCATC
CTCACCTTCT CGCTCTCGCT GGTCGGCACC TTCATCGTCC GCTCCGGCCT GCTCACCTCG
GTGCACAGCT TCGCCTCCGA TCCGAGCCGC GGCGTGTTCA TCCTCGCGAT CCTCGCGCTG
TTCATCGGCG GCGCGCTGAG CCTGTTCGCG TGGCGGGCGC CGAGCCTGCG CCAGGGCGGC
CTGTTCGCGC CGATCTCCCG CGAGGGTGCG CTGGTGATGA ACAACCTGTT CCTGGTCGCC
GCCTGCGCCA CGGTGTTCGT CGGCACTCTC TATCCGCTGC TGCTGGAGAT GCTGACGGGC
GAAAAGATCT CGGTCGGCCC GCCCTTCTTC AACTGGACCT TTATCCCCCT GGCGCTGCCG
CTCCTTGTGA TCGTGCCGTT CGGGCAGGCG CTCGCGTGGA AGCGGGGTGA TGCCGCGGCG
GCCGCTCAGC GGCTGCTGGC CGCCTTCGCG GTGGCCCTCG TCGTCGCGCT CGGCGCGGCG
GCTTGGGCCT GGGGCGGCCC GGTGATGGCG CCCGTCGGCC TCGGCTTCGG CGCCTACCTC
ATCATCGGCT CCGTCCTCGA GATCTGGGCG CGCGCCCGCG GCTACGGCCA CAACCGGACG
CGTGATTTCG GCACGACGTG GCGCCGGGCG GTCGGCCTGC CGCGCTCGGC CTGGGGCACG
GCTCTGGCCC ATGCCGGCGT CGGCGTCGTC GTGCTCGGCA TCGCCGGGCA GGGCTGGGCC
ACGGAAGGGC TCGCGACGAT CCGGCCGGGC GGTCAGGTCG CCTCCGGCCC CTATGTCGCC
ACCCTCGACC GCATCGGCCC GACCAAGGGC GAGAACTACG AGGAGACCAC CGCCTTCCTG
ACGCTGCGCA ACCGCGCGGG TGACTATGTC GGCACGGCCG AGACCGGCAA GCGCTTCTAT
CCCTCCCGCC GGATGACGGT GACCGAATCC GGCCTGAAGA CGGTCGGCGT CAGCCAGATC
TATGCCAGCC TCGGCGAGGT GATGCCCGAC GGCTCGATCG GCATGCGGCT CTACTACAAG
CCGCTGGTGC TGCTGATCTG GATCGGTTCG CTCATCATGG CGGCCGGCGG CGGCCTCTCG
CTCACCGACC GGCGCATGCG TGTCGGCGCC CCGGTCAAGG CGCGCGCCAA GCTGCCGCCC
TCCGCGGTGC CCGCCGAATG A
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| Protein sequence | MIVEIGHYAL ALALALSLVQ AVMPAWAARS GDAALREVAG PAALGTFACI LFAFCALTYA
HVTSDFSVQN VVENSHTAKP LIYKISGVWG NHEGSMLLWV LILALFGAWV ATAKTSVPPV
LRTNTLMVQA SVTFVFVLFI ITTSNPFARV APAPLEGNDL NPLLQDFGLA IHPPLLYLGY
VGFSVTFAFA VAALIEGRID AVWARAVRPW ALIAWSFLTL GIAMGSYWAY YELGWGGWWF
WDPVENASLM PWIAGTALLH SIVVMEKRDA LKVWTVLLAI LTFSLSLVGT FIVRSGLLTS
VHSFASDPSR GVFILAILAL FIGGALSLFA WRAPSLRQGG LFAPISREGA LVMNNLFLVA
ACATVFVGTL YPLLLEMLTG EKISVGPPFF NWTFIPLALP LLVIVPFGQA LAWKRGDAAA
AAQRLLAAFA VALVVALGAA AWAWGGPVMA PVGLGFGAYL IIGSVLEIWA RARGYGHNRT
RDFGTTWRRA VGLPRSAWGT ALAHAGVGVV VLGIAGQGWA TEGLATIRPG GQVASGPYVA
TLDRIGPTKG ENYEETTAFL TLRNRAGDYV GTAETGKRFY PSRRMTVTES GLKTVGVSQI
YASLGEVMPD GSIGMRLYYK PLVLLIWIGS LIMAAGGGLS LTDRRMRVGA PVKARAKLPP
SAVPAE
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