| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mchl_5458 |
|---|
| Symbol | |
|---|
| ID | 7119241 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium chloromethanicum CM4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011758 |
|---|
| Strand | - |
|---|
| Start bp | 82852 |
|---|
| End bp | 83814 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 643528139 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_002424135 |
|---|
| Protein GI | 218533320 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCTTT CCACTCCCGG CTCGCAGAAC CGCGCGCGGG GGAGGTTCGC AGCTCACTCG
AGCCCCTCTC CCGTCAGTCT GCCGCGCGTT CTCTCGAAAT TCGGCTTTTG TTCACGACGC
TCGGCGGAGG TCTTGATCGA GAGCGGGCGG GTCCGCGTTG ACGGCCGTGT GGTCCGCAAT
GCGGGCGTGC GCGTGGATCC CCAGCGCGCT GCGATCTGCG TCGATGGCCG CCGGTTGGTC
TCCGCGGCAA AGGTCTACCT GCTGCTGAAC AAGCCACGCG GCCTGCTTAC GACCTATGGC
GACCCTCAAG GCCGCAAGAC GGTCTACGAC TGTCTCGCGG GACACGACTT GCCGTTCCTC
GCGCCGGTTG GACGACTGGA CTGCGCGAGT GAGGGCTTGC TGCTCATGAC CAACGATACG
CGGTGGGCGC ATCGTCTTCT CGATCCAGCC TCCAACGTCG ACAAGGTCTA CCATGTGCAA
ATTGATCGCA GGCCGGACGA GGCCCTGCTG ACCGGGTTGC GAGAAGGCGT GGCGCATGAT
GGGGAGCGGC TTGCCGCCAA ATCGGTGGCA CCACTGCGTG TCGGCGAGCG CAACGCCTGG
CTCGAAGTCG TCCTGAGCGA AGGCCGGAAC CGTCAGATCC GACGCATGAT GGCGCTCAAT
GGGGCCGAGG TACTTCGGCT CGTGCGCGTC GCGGTCGGCG GCGTCCGTCT CGGTGATGTG
AGGAAGGGCG CGTTCCGCCA CCTGACCGAC GCCGAAAGAG CGTGCTTGGC GGCCGGTGGC
AGGACCGACA GCATTCGCCG GTCGCCTACC GCCGGTCGCG CCGAGAATGG AAGGGAAACC
TTCTCGGCAG AGCGCTTGCT CCAGCGATCC GTTGCAACTT CTTCAATCCG TTCCGACACC
GAACGAGATC AATTGCGCAT GCCGATAGAA GGCGGTGTCG CGCTTGGAAG GCACCTGATT
TGA
|
|---|
| Protein sequence | MSLSTPGSQN RARGRFAAHS SPSPVSLPRV LSKFGFCSRR SAEVLIESGR VRVDGRVVRN
AGVRVDPQRA AICVDGRRLV SAAKVYLLLN KPRGLLTTYG DPQGRKTVYD CLAGHDLPFL
APVGRLDCAS EGLLLMTNDT RWAHRLLDPA SNVDKVYHVQ IDRRPDEALL TGLREGVAHD
GERLAAKSVA PLRVGERNAW LEVVLSEGRN RQIRRMMALN GAEVLRLVRV AVGGVRLGDV
RKGAFRHLTD AERACLAAGG RTDSIRRSPT AGRAENGRET FSAERLLQRS VATSSIRSDT
ERDQLRMPIE GGVALGRHLI
|
|---|
| |