Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mbur_0198 |
Symbol | |
ID | 3997165 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanococcoides burtonii DSM 6242 |
Kingdom | Archaea |
Replicon accession | NC_007955 |
Strand | + |
Start bp | 180357 |
End bp | 181148 |
Gene Length | 792 bp |
Protein Length | 263 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 637958035 |
Product | exosome complex RNA-binding protein Rrp4 |
Protein accession | YP_564958 |
Protein GI | 91772266 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1097] RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.000000947081 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATCGTA AAATCGTAAT CCCCGGGCAA TTACTTTCTG AGAAGAAAGA AATGGCCGGG CCAGGTACTT ATGTTAAAAA TGGAAATATC TATTCTTTAC TTTATGGAAT TGCAAATTTC AAGGGAAGGG TTTCAGTAGT ACCTTTTTCA GGAAAATATA TTCCCTCACG TAAGGATTTC ATTATTGTGA ATGTCATTGA TGTCACTCCT TCCAACTGGA TAATGGAAAC CGGTTCTCCG TATGATGGTC TTCTTCATGT ATCCGAATTT CCTAAACGTG TCGATTCTTC TGAAATGAGG AAGTTCATGG ATGTCGGGGA TTGTGTCATT GTTCGTGTGA AGGATGTTAG CAAGGCTATG AAAGTAGAGC TTTCAATGCG TGAGCAGGGC TCAAGAGCAT TAAGTAAAGG TCGTATCATT GAAGTTGTGC CTTCAAAGGT ACCACGTGTC ATCGGACATG GTGGGTCAAT GGTATCAATT CTTAAGAAAG AGTCGAATTG TGATGTGTTC GTAGGAAAGA ACGGCCGTAT CTGGATAAAT GGTAAGGATA AAGATATGGA CCGTCTTACG ACAGCGATCG AAATGATAGA AAGTGAATCT CATATGTCCG GTTTAACGGA TAAGGTCGGC ATGTTTTTGA GGGGTGAACC GGAAGGGACC GAGGGTTCCG ATGAAGAACA GCTAGTAGAT GAAGAAGTTG CTGGTGTGTC CCTTGAAGAT GATGACGTTA CCGAAGAGAC CAGCCGTAAG GTCGATGTCT TGCTGGACAA TGATACCGAT GAGACTAATT AA
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Protein sequence | MDRKIVIPGQ LLSEKKEMAG PGTYVKNGNI YSLLYGIANF KGRVSVVPFS GKYIPSRKDF IIVNVIDVTP SNWIMETGSP YDGLLHVSEF PKRVDSSEMR KFMDVGDCVI VRVKDVSKAM KVELSMREQG SRALSKGRII EVVPSKVPRV IGHGGSMVSI LKKESNCDVF VGKNGRIWIN GKDKDMDRLT TAIEMIESES HMSGLTDKVG MFLRGEPEGT EGSDEEQLVD EEVAGVSLED DDVTEETSRK VDVLLDNDTD ETN
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