Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mbur_0028 |
Symbol | |
ID | 3996891 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanococcoides burtonii DSM 6242 |
Kingdom | Archaea |
Replicon accession | NC_007955 |
Strand | + |
Start bp | 15375 |
End bp | 16370 |
Gene Length | 996 bp |
Protein Length | 331 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637957870 |
Product | H/ACA RNA-protein complex component Cbf5p |
Protein accession | YP_564802 |
Protein GI | 91772110 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00425] rRNA pseudouridine synthase, putative [TIGR00431] tRNA pseudouridine 55 synthase [TIGR00451] uncharacterized domain 2 |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.000488795 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGTTTCAT CTAAACGTTC TCCCAAAGAT GTTAATATTA TGGTGGAAAA ATTTCACGCA ACTACCAATG CAGCATATGG TTGTCTTCCT CAGGACCGAC CGATCCTTGA GTATATTAAT ATGGGTGTTG TGAACATCGA TAAGGCAATA GGCCCAACCA GTCACGAGGT CACAGCATGG GTAAGGGATA TGCTCGGTGT GAAAAAAGCA GGACATTCCG GATCACTTGA TCCGCATGTA ACTGGTCTGC TTCCCGTGAT GCTTGGCAGG GCAACAAAAG CGGTCTCAGC TCTGCGTCTT TCCGGAAAAG AGTACATTTG TGTTATGCAT TTGCATGATG ACATCCCTGA TAGGAAGATC CGAAAAGCAT GCAAGGAATT CACAGGTCCT ATCTACCAGA CCCCTCCAAT TATCTCTGCT GTCAAAAGGC AATTGAGGAT CAGGAACATC TATTATCTGG ATGTCCTTGA GATCGAAGGT AGGGAAGTGC TCATGAGAGT GGGTTGTGAG GCAGGGACAT ATCTTCGCAA ACTCTGTCAT GACATCGGCC TTGTCCTTGG TTGTGGCGGT CACATGAAGC AGCTTCGAAG AACCGGAACG GGTCCGTTCA GGGAGGATAC GCTTGTATCA CTATATGACC TCAAGGATGC ATGCGTGTTC TGGCAGGAAG ATGGCGATGA GTCTGAACTA CGCAAATTGG TACGTCCAAT GGAAGAAGGT CTGTCCCATC TGCCGAAGAT CATCATTCGT GATAGTGCTG TAGATGCTGT TTGCAGGGGT GCTTCCCTTG CAGTTCCCGG TATCGTTTCA TTCAGTAAAT GCATCCAAAA AGATGACAAA ATTGCCGTTT TCACTCTAAA AGGAGAAGCT GTGGCACTTT GCAGGTCATT CATGAATGCA GATGAACTTG AAAATGAAAG TCACGGCATA GCCTGTATTA CCGAAAGGGT AATAATGGAT GCCGCTATTT ATCCAAGGTG CTGGAAGGCG AAATAA
|
Protein sequence | MVSSKRSPKD VNIMVEKFHA TTNAAYGCLP QDRPILEYIN MGVVNIDKAI GPTSHEVTAW VRDMLGVKKA GHSGSLDPHV TGLLPVMLGR ATKAVSALRL SGKEYICVMH LHDDIPDRKI RKACKEFTGP IYQTPPIISA VKRQLRIRNI YYLDVLEIEG REVLMRVGCE AGTYLRKLCH DIGLVLGCGG HMKQLRRTGT GPFREDTLVS LYDLKDACVF WQEDGDESEL RKLVRPMEEG LSHLPKIIIR DSAVDAVCRG ASLAVPGIVS FSKCIQKDDK IAVFTLKGEA VALCRSFMNA DELENESHGI ACITERVIMD AAIYPRCWKA K
|
| |