Gene Mboo_2116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMboo_2116 
Symbol 
ID5411214 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Methanoregula boonei 6A8 
KingdomArchaea 
Replicon accessionNC_009712 
Strand
Start bp2189785 
End bp2191059 
Gene Length1275 bp 
Protein Length424 aa 
Translation table11 
GC content61% 
IMG OID640869361 
Productpyridoxal-5'-phosphate-dependent enzyme, beta subunit 
Protein accessionYP_001405273 
Protein GI154151655 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0498] Threonine synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCCCCA AGTACCGCAT CCGGTGCATC AGCGGGGGGG AGATTGTCCC CGATATCACC 
TCCCTTTCCT GCCCTGCCGG CCATGATTCC CTGCTGCGCA CCGAGTACAC CAGCCGCAGG
CTGCAGCTCT CTTACCACAG CGGGATCTTC CGGTACCTTT GCTGGCTGCC CGTTACCGCC
CCCTTACTCC CATCAGGGGG TCCGGTAACT TTTACCAGTG ATGAGCTCTC CCGCGAGCTC
GGGCTTTCCC GGCTTGCCAT CTCCTTTTCC GGGTATTCCC CGGAGCATCA CGCCTCCCTT
ACCACCGGTT CGTTCAAGGA ACTCGAAGCC CTTGCCACCC TCCAGAGGCT CTGGGAACTG
GGAAAGAAGA TCCCGGTGAT TGCATCCGCG GGGAACACCG GGCGGGCCTT CGCCGGGCTC
TCGGCACAGT ACGGAAAACC TGTTGTCGTG GTTGTACCCT CCAGTGCGGT CTCCCGCCTC
TGGACAACGA CTCCCGCACA GGACGTCTTC CTCGTTGCGG TGGACGGGGA TTATACCGAT
GCAATCGCGG TGAGCACCGC GCTTGCAACG GTCCCCGGGT GCGTGCCGGA AGGCGGGGCA
AGGAACGTTG CCCGCCGTGA CGGCATGGGA ACCACAGTGC TTGATGCCGC AGTCACGCTC
GGCCGGATAC CGGATCATTA TTTCCAGGCT GTCGGGAGCG GCACGGGAGC GATTGCGGCG
TGGGAAGCGG CGCTCCGCCT TATCGGGGAT GGCAGGTACG GCACAAAACT TCCCCGCCTT
CACCTGGCCC AGAATAAGCC ATTTACTCCC ATCGTTTTGG CATGGCAGCA GCGCCGTCGT
ACCTTTAAGC CGGAGCTTGA TATGCCGGAT GCACCCAATG CCATAAAGGA GGTAATGTCC
CCGGTGCTCA CGAACCGCAG CCCGCCCTAT GGCATAGGGG GCGGGCTCTT TGATGCCCTT
CAGGCAACGG AAGGGCAGAT GTATGCGGTA TCAAACGACG AGGGAAAGAA AGGAATGGCA
CTCATCAGGG ATACTCTGGG GATCGATCCT GATCCGGCAG CAGCGGTTGC CACAGCAGCG
CTCGTGCAGG CAGCAGCGGC CGGCACCGTT GGACCGGACG ACTCTATCCT CCTCAATATC
ACCGGGGGAG GCTATGAAAG AATACGGGAG GATTATACTC TCTATCCGAT CGAACCGTCT
GTGACGGTCA ATCAGCACGA AACCGGGGAT ACCCTGAAGG CAGAACTTTC ACGGTGGGTC
GCACACTATG GATGA
 
Protein sequence
MIPKYRIRCI SGGEIVPDIT SLSCPAGHDS LLRTEYTSRR LQLSYHSGIF RYLCWLPVTA 
PLLPSGGPVT FTSDELSREL GLSRLAISFS GYSPEHHASL TTGSFKELEA LATLQRLWEL
GKKIPVIASA GNTGRAFAGL SAQYGKPVVV VVPSSAVSRL WTTTPAQDVF LVAVDGDYTD
AIAVSTALAT VPGCVPEGGA RNVARRDGMG TTVLDAAVTL GRIPDHYFQA VGSGTGAIAA
WEAALRLIGD GRYGTKLPRL HLAQNKPFTP IVLAWQQRRR TFKPELDMPD APNAIKEVMS
PVLTNRSPPY GIGGGLFDAL QATEGQMYAV SNDEGKKGMA LIRDTLGIDP DPAAAVATAA
LVQAAAAGTV GPDDSILLNI TGGGYERIRE DYTLYPIEPS VTVNQHETGD TLKAELSRWV
AHYG