| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_0245 |
|---|
| Symbol | |
|---|
| ID | 5410560 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | - |
|---|
| Start bp | 226961 |
|---|
| End bp | 227602 |
|---|
| Gene Length | 642 bp |
|---|
| Protein Length | 213 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640867461 |
|---|
| Product | DNA-directed RNA polymerase subunit E' |
|---|
| Protein accession | YP_001403410 |
|---|
| Protein GI | 154149792 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1095] DNA-directed RNA polymerase, subunit E' |
|---|
| TIGRFAM ID | [TIGR00448] DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATTACA AGATGACACT GGAAGACAAA GTCAGGGTGC CCCCCAACCG GCTGGGTGAA
AAACTGGACA AGGTCATCCT TGAAGTCCTT CAGGAACAGC TGGAGGGAAG TATTGACAAG
GAACTGGGCG TCTTTATCGC CGTGACCAAA GTCGAGCACG TCGGGGAGGG AGAGATAGTA
CCCGGTGACG GCGGCGTCTA TTATGATGTA AAGTTCGAAG GGCTTGTCCT GCGACTCGCC
CTGCAGGAAG TTATCGAGGG TATCGTGGTG GAGACCACGA GCTTTGGGGC ATTTATCAGC
CTCGGACCGA TCGATGCAAT GCTGCATGTC AGCCAGATCT CTGATGAATA CATCAACTTT
GATGAGAAAA ATGCCCGCCT CATCTGCCAG GACTCCAAGA GATATATCGG TGTTGGCGAT
ACGGTCCGGG TCAGGGTCGT AACACTCTCC TTAAACGAGC GCGAGCCCCG GGACAGCAAG
ATCGGGCTTA CCATGCGGCA GGCCGGCCTT GGTACCACGC TCTGGCTCGA AGAGGAGATT
GAGAAAGAAA AGGAGAGGGC TGCAGGCGGA GCGGCGGCGG CCCCAAAGGA GAGAGCCGAA
AAGGCCAAAG GCAAGAGGAA AGAACATGCC GCCGATGAAT AA
|
|---|
| Protein sequence | MYYKMTLEDK VRVPPNRLGE KLDKVILEVL QEQLEGSIDK ELGVFIAVTK VEHVGEGEIV
PGDGGVYYDV KFEGLVLRLA LQEVIEGIVV ETTSFGAFIS LGPIDAMLHV SQISDEYINF
DEKNARLICQ DSKRYIGVGD TVRVRVVTLS LNEREPRDSK IGLTMRQAGL GTTLWLEEEI
EKEKERAAGG AAAAPKERAE KAKGKRKEHA ADE
|
|---|
| |