| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A3428 |
|---|
| Symbol | |
|---|
| ID | 3624715 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 4394471 |
|---|
| End bp | 4395139 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 637702256 |
|---|
| Product | cytochrome c-type biogenesis protein ccdA |
|---|
| Protein accession | YP_306881 |
|---|
| Protein GI | 73670866 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0785] Cytochrome c biogenesis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0739386 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0766183 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCAA CATTTGACCC TTCTGTAACT GGTATATTTG TTTTTGGGCT ACTAGCAGGT
ATCTGCCCAT GTAATAGCGT GTTATGCTTA GGATTAATAG GTTACCTTAC AAGCGGAAAA
ACAAACTTAT CACTTTTGAA CATACTTAAA CTAGTTTTCT CATTTTCAAT AGGCACTGTG
CTAGTACTAT TGCCGCTTGG ATTTATTGCT GGATACATTG GTAAATATAT ATTGTTTTTA
AATAGTGCAA TCGCTTGGGC AATTGGTGGT ATATTAATGA TTGCAATGGG ATTACAACTA
TTACATGTTT ACAAACCACC AATACGAAGC ATGTACAATT TTTTTAAATT ACCTAACTCT
TACACAATAA TGGGAGCATT CTTACTTGGG CTTTCTTTTG GGGCAATTAC AATAGGTAGA
GGTGCTCCGA TGCTAATAAT TGTATTAACT TATATAGGAT TGTATCAAAC GCCGCTTCAA
GGGACACTTA CTATGTTAAT ATACGCTATT GGTCTAAGTA TTCCTCTTAT GGTGATCAGC
TCTATTGGTG GTTCAATAGG TAAAAAAATT AAGGAAACCA CCAGAATGAG TGGTGACCTC
ATGGATAGAG TAATAGGAGT ATCAATTATA ATAATCGGCC TTTATTTCCT ATATCTAGCC
ACGCAATAA
|
|---|
| Protein sequence | MTATFDPSVT GIFVFGLLAG ICPCNSVLCL GLIGYLTSGK TNLSLLNILK LVFSFSIGTV
LVLLPLGFIA GYIGKYILFL NSAIAWAIGG ILMIAMGLQL LHVYKPPIRS MYNFFKLPNS
YTIMGAFLLG LSFGAITIGR GAPMLIIVLT YIGLYQTPLQ GTLTMLIYAI GLSIPLMVIS
SIGGSIGKKI KETTRMSGDL MDRVIGVSII IIGLYFLYLA TQ
|
|---|
| |