| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A2949 |
|---|
| Symbol | |
|---|
| ID | 3626148 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 3789903 |
|---|
| End bp | 3790556 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637701794 |
|---|
| Product | haloacid dehalogenase-like hydrolase |
|---|
| Protein accession | YP_306424 |
|---|
| Protein GI | 73670409 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.100254 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0105539 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCCAAA AAGGAAAAAT TAAGGGCTTA ATCTTTGATT GTTACAAAAC CCTTATCGAC
ATCAAAACTG ACGAAAAAAG TCTAGAAACA AATGAAAGAG TAAGCAGATG GCTGCTTTAC
CAGGGGGTGC GGATAGAACC TGAGAGGCTC AGGGAAGAAT ACAAATGGAA AATCATAGGC
AGACTAGGCA ATTCAGGCCA GCAGCACCCG GATATCCGTA TAGAAGAGAT CTTTGCGGAA
ATTTGTGCCG AAAACGCCTT TAAAGAAATC GATCCTTATT GGCTTGGAAT TGAGACAGCA
AAGGTCTTCA GAACTGCATC TATAAGAAAA CTTGAGGCTT ACCCTCAGAG CCTGCAGCTG
CTTGAAAAAT ACAGAAATAT CCCGAAATGC ATCGTTTCCA ATGCTCAGAG AGTTTTTACG
GAACAGGAAC TGCGCTTTCT GGGCCTGTAT GATCGCTTTA ACTTCACAAT TATGTCTTCG
GACCATCGTA TAAAGAAACC TGATACCCGG CTCTTCAAGA TGGCTCTTGA CGGTCTCGGG
CTTGAGCCCT GGGAAGTGCT CTCTATCGGC GACACTCCAG AAAACGATAT TTATCCCCCT
CAAAGTCTCG GAATGAATGC AATGCACATC CGAGATGCCT GGAGATATGC ATAA
|
|---|
| Protein sequence | MLQKGKIKGL IFDCYKTLID IKTDEKSLET NERVSRWLLY QGVRIEPERL REEYKWKIIG
RLGNSGQQHP DIRIEEIFAE ICAENAFKEI DPYWLGIETA KVFRTASIRK LEAYPQSLQL
LEKYRNIPKC IVSNAQRVFT EQELRFLGLY DRFNFTIMSS DHRIKKPDTR LFKMALDGLG
LEPWEVLSIG DTPENDIYPP QSLGMNAMHI RDAWRYA
|
|---|
| |