| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A2703 |
|---|
| Symbol | |
|---|
| ID | 3624451 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 3428171 |
|---|
| End bp | 3430411 |
|---|
| Gene Length | 2241 bp |
|---|
| Protein Length | 746 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637701557 |
|---|
| Product | nitrogen fixation protein NifH/NifE |
|---|
| Protein accession | YP_306187 |
|---|
| Protein GI | 73670172 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1348] Nitrogenase subunit NifH (ATPase)
[COG2710] Nitrogenase molybdenum-iron protein, alpha and beta chains |
|---|
| TIGRFAM ID | [TIGR01287] nitrogenase iron protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.15509 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAATAAGC GGGTCCTTCA GGTCGGCTGC GACCCAAAAC ACGATTCTAC CCGTCTGCTC
CTTGGAGGAG CTGACATGCC CACAGTATTG GACTATATGC GTGAAACTCC TCAGGAAGCA
CAGAAGCTTG AAGATCTGGT ATTTGAAGGC TACGGAGGTA CTGCTTGCGT GGAAGCCGGG
GGTCCAAAAC CCGGGATCGG ATGTGCAGGT AGAGGGATAC TGAGCAGTTT TGAGGTCTTA
AAACGTGTGG GACTCAGGGC TTCTTCCTTT GACATCGTAC TTTATGATGT GCTTGGAGAT
GTTGTCTGCG GGGGATTTGC AGTTCCCCTG AGAAAAGAAT ATGCCGATGC TGTTTTTCTG
GTAACTTCAG GGGAATACAT GGCCTTGTAC GCTGCTAACA ATATCCTCAG AGGAATCCGA
AATTTTGAGG ATTCAGTTCC CAGGGTTGCA GGTATTATCT TCAACAGACG AGGGCTTTTT
GAGGAGGAGG AAAGGGTCTT TGCCTTTGCC CGGGCAACAG GTTTGCCTGT GCTGGCTTCT
ATCCCAAGGG ATGAAGTCTT TTCTCAGGCT GAAAAAGTAG GGAAAACCCT GGCTGAAGCT
TTTCCTTCCT CTGCTCCTGC AGGTATTTTC AGAGAGCTGG CATTGTATGT GAAAAACCTG
GAAAAGGACC GGAACCTGCT GCATCCTGCC AACCCTCTCG GTGACATTGA GCTTGAGGCT
CTGGTGCTGG GAAGGCGGGA ACGGCCCTGT ATAAAGCCAT TCGGAACAGG TTCTATATCC
AGAAAAATAT CCTGTGCTGA ACCTCTTTCT CTCAGCCAAG AAAATAGACC TTTCGCAGAA
ATCCATATGG AGATACCAGA AACAAGTTCC GAGAAAATCT GTCCGGTGAT TTCAGAAGCG
CAGTCTGCAG AAATTTCCTC CAGAACTCCA ACAGAAGAAG TATCCCCATC ATCCCAGGCA
AAACACCTCT CCAGACCTCT CCTTTGCGGC TGTGCCTTTT CAGGAGCTGT GACTGCTACT
TTTCAGGTTA ACGATGCCGC CACGGTCCTG CATGGGCCTA GGAGTTGCAC TTATATAACG
GCCGATGCCC TTACACGCTC GTTTTTATTA GGAGATGGAA GGAATATCAC AGATAAGGAA
AAACAAGTCC CTGGCCTCCT GCCGACAGAC ATGAAGGAAG AGGACATTAT CTTTGGTGGA
CTCGAAAAAC TTGAGAATAG AATAGAGAAA GCCCTTTTAG CTGGCTGGCA AACGGTCTTT
GTGGTGAGCA CCTGTCCAGG AGGGATCATA GGAGACGATA TAAAGGAAGC AGTATCAAGA
GCCAAAGTTC GTTTTCCTGG AGCCAGGGTC ATTCCTATCC CTGTGGAAGG CGTCATTACG
GGAGATTTTT CGGCTGGTAT GCTCGAGGGT CGCAAACGCG TTGCTGATCT GATCGACCCC
TCCGTAAGGC CCGAAAAAGG CCTGGTTAAT ATAATAGGAG AAAGGAATTT TTCCTCTCAA
GAAGAAAAAA ACTTCTGTAT TGTTGAGAAA TTGCTTCAAA GACTGGGATA CAGGGTCAAC
TGCAGGTTTT TAAAAGAGAC AGATACCCTT TCCCTTCGCT CTTTTAAAAA AGCGGAGCTC
AACCTTTTAG CCTGTACCGA CCCTGATACC CGGGCCATCC AGGAATACCT CTCCGAGCGT
TTCAGGCTTG AGTTTTTTGA GCTTCCATTC CCTGTGGGTT TTCGGGAAAG TTCCATTTGG
GTAAAAGCTC TGGCAGCACG CTTGCTTCCC GGAAAGGATG TCTCTTCCTT GCTGCAGGAA
CAGGAAAAGG TGTACAAAGC AGGGATCGAG AAATATGTTC CCAATCTCTC GGGAAAGCGT
GTACTCTTGG TGAGTTACAC CGAAGATATC AGCTGGGTTC TGGACACAAT CCGAGACCTG
GGAATGGAAA TCCTCAAGGT TGGTTTTTCA GTCTCGACTT TCAGGAAGGA ACTTCCGGAC
CTCCTGTCCG ATGAAGGATT CCCTGTGGAG AGAAACTATA CGGATGAAAT GAGGGCTAAG
GATGTCAGGG ATCTCAGACC GGACCTTGTT CTTTCGAGTT ATGTCCCTTC GGTCCCTGAA
GGTGGAGTGC ATTATGATAC CATACCCGTC TCCCCGCAGG TTGGGTTCCT TAGCGGGCTT
GAACTTGCAA AACGCTGGAG TACGCTTTTG AGGCTGCCAG TTGTGGAGGG ATGGAAGTAT
GATGGAGGTG ATGAAAGTTG A
|
|---|
| Protein sequence | MNKRVLQVGC DPKHDSTRLL LGGADMPTVL DYMRETPQEA QKLEDLVFEG YGGTACVEAG
GPKPGIGCAG RGILSSFEVL KRVGLRASSF DIVLYDVLGD VVCGGFAVPL RKEYADAVFL
VTSGEYMALY AANNILRGIR NFEDSVPRVA GIIFNRRGLF EEEERVFAFA RATGLPVLAS
IPRDEVFSQA EKVGKTLAEA FPSSAPAGIF RELALYVKNL EKDRNLLHPA NPLGDIELEA
LVLGRRERPC IKPFGTGSIS RKISCAEPLS LSQENRPFAE IHMEIPETSS EKICPVISEA
QSAEISSRTP TEEVSPSSQA KHLSRPLLCG CAFSGAVTAT FQVNDAATVL HGPRSCTYIT
ADALTRSFLL GDGRNITDKE KQVPGLLPTD MKEEDIIFGG LEKLENRIEK ALLAGWQTVF
VVSTCPGGII GDDIKEAVSR AKVRFPGARV IPIPVEGVIT GDFSAGMLEG RKRVADLIDP
SVRPEKGLVN IIGERNFSSQ EEKNFCIVEK LLQRLGYRVN CRFLKETDTL SLRSFKKAEL
NLLACTDPDT RAIQEYLSER FRLEFFELPF PVGFRESSIW VKALAARLLP GKDVSSLLQE
QEKVYKAGIE KYVPNLSGKR VLLVSYTEDI SWVLDTIRDL GMEILKVGFS VSTFRKELPD
LLSDEGFPVE RNYTDEMRAK DVRDLRPDLV LSSYVPSVPE GGVHYDTIPV SPQVGFLSGL
ELAKRWSTLL RLPVVEGWKY DGGDES
|
|---|
| |