| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A1560 |
|---|
| Symbol | |
|---|
| ID | 3625977 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 1920948 |
|---|
| End bp | 1922312 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637700441 |
|---|
| Product | formylmethanofuran dehydrogenase, subunit B |
|---|
| Protein accession | YP_305087 |
|---|
| Protein GI | 73669072 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1029] Formylmethanofuran dehydrogenase subunit B |
|---|
| TIGRFAM ID | [TIGR03129] formylmethanofuran dehydrogenase subunit B |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0264444 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTACA AAAACATAGT CTGTCCTGTT TGTGGAGCTG CCTGCGACGA TATCCAGGTT
GAAATCAAGG ATGGAAAGAT TGAAGCTAAA AATGTATGCA AGATGGGAAT TTTCAGATTT
AATGAGATTA CAAGTCCCCG GAGATTTAAA CAGCCCTTTC TAAAGTTTGG AGGGAAACTA
AGACCTGTTT CTTGGGACGG AGCCCTTCAA ATAGCCGCAG ACATCCTGTC TTCGGCCAAG
CGTCCTCTTA TTTTCATAGG CAGCGAAACT TCCTGTGAAG CACATAAAGT GGGACTTATG
ATAGGGGAAC ATCTGGGTGC AATTGTTGAT ACCGTTGGCA ATGGGGCCAC AGTGATGGGA
ACTCAGGAAG CCGGAAGAGT CGGTGCAACT GAAGGACAGA AGAAAAACAG AGCTGATCTT
TTGGTGTACT GGGGTGCCAA TCCTCTTGAA TCTATGCCGA GACAGATGTC AAGATATGGG
GTTTTTCCCA GAGGCTACTG GACAAAACGC GGGCGTTTTG ATAGAACGAT CATTACTGTG
GATCCAAGAA AAACTCTAAC TGCTAGAGCT TCTGACCTTC ACGTGCAGCT TAAACCTGGC
TCCGACTATG AGCTAATAAG TGCACTCTTG ACGCTTTTAC ATGGAAAAAC TCCTCATCAT
TCCGTAGAGG AGATTACAGG AGTTTCTATT TCTGTTATGG AAGAGATGCT CGGTATAATG
AAAAACTGCA ATTTTGGGAC TATCTCAGTG GGAATTGGAC TGTCTTCATC TCTTGGGAAA
TACAGGAATA TTGAAATTGC CATGAACCTT GTAAAAGAGC TAAATAATTA TTCCAAATTT
ACCATTGGAA TTATCCGCAG TCACTGCAAT GCGGCAGGCT TTACCCAGGT CGCTTCCTAT
ATGTATGGCT ACCCCTTCGG GCTTGACTTC ATGCGTGGAC ACCCACGCTA CAACCCTGGA
GAATTCACAA CCGTAGATTT GCTTCGAGAA AAGGATGTGG ATGCAGCTTT TGTAATATGT
TCTGATCTTT TGAGTCAGAT CCCCACTGAC TGTGCAGATT ACCTTGCAGA AATTCCTTTG
ATCTGCCTGG ATACAGTTCC TTGTCCAACT ACGTCAATCT CAGACATTGT GCTTCCGGGA
GTCATTGACT CCATAGAGTG CGAAGGGACT TTCTACAGGC TTGACGATGT GCCTATTTAC
TTTGAACCGT TCCTTGATTC TCCATTTAAA TTCACTCAGA GTAATGAAGA TACCTTAAAA
CAGCTTTTTG AAAAAATAAA AGAAGAAAAC GATCATACTG GTTTTCTCCA ATCTGCATTT
AAGCAAGAGG AAGCAATGCC TGCAATTTTG CCTGGAGTAC TATGA
|
|---|
| Protein sequence | MIYKNIVCPV CGAACDDIQV EIKDGKIEAK NVCKMGIFRF NEITSPRRFK QPFLKFGGKL
RPVSWDGALQ IAADILSSAK RPLIFIGSET SCEAHKVGLM IGEHLGAIVD TVGNGATVMG
TQEAGRVGAT EGQKKNRADL LVYWGANPLE SMPRQMSRYG VFPRGYWTKR GRFDRTIITV
DPRKTLTARA SDLHVQLKPG SDYELISALL TLLHGKTPHH SVEEITGVSI SVMEEMLGIM
KNCNFGTISV GIGLSSSLGK YRNIEIAMNL VKELNNYSKF TIGIIRSHCN AAGFTQVASY
MYGYPFGLDF MRGHPRYNPG EFTTVDLLRE KDVDAAFVIC SDLLSQIPTD CADYLAEIPL
ICLDTVPCPT TSISDIVLPG VIDSIECEGT FYRLDDVPIY FEPFLDSPFK FTQSNEDTLK
QLFEKIKEEN DHTGFLQSAF KQEEAMPAIL PGVL
|
|---|
| |