Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Maeo_1160 |
Symbol | truD |
ID | 5326725 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanococcus aeolicus Nankai-3 |
Kingdom | Archaea |
Replicon accession | NC_009635 |
Strand | + |
Start bp | 1217750 |
End bp | 1218949 |
Gene Length | 1200 bp |
Protein Length | 399 aa |
Translation table | 11 |
GC content | 23% |
IMG OID | 640788563 |
Product | tRNA pseudouridine synthase D |
Protein accession | YP_001325349 |
Protein GI | 150401583 |
COG category | [S] Function unknown |
COG ID | [COG0585] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000300328 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATTAA GGCAAACTAA TGGCGATTTC ATTGTAAATG AGATATTGGA CAATGAATTT ATAAAAGAAA ATCCATCGGG CAATTATAGT TTATATATTT TAAAAAAATC AAATATTGAA AATTTAAAGG CATTAAATTA TATCTCTAAA AATTGCAATA TTCCGATAAA TGATATAGGA TACTGCGGTT TAAAAGATAA ATATGCTATA ACAACACAAT ATATTTCAAT ACCTACAAAA TACGATAAAA TTGAATTAAA TGAGAAAAAT TTAACATTAA AATATTTAAA AACAATAAAT AGTCCCTTAA AAATTGGTAG TTTAATGGGA AATTCTTTTA AAATTACAGT TAGGGCAATT GATAAAAACG ATTTTTCAAA TATTTCTAAA AATTTACAGA ATTTGGAGCA AGGAGCTCCT AACTATTTTG ATGACCAAAG ATTTGGAAGT GTATTTCATA ATCAATTTAT AGCAAAATAT TATTTAAAAG GAGAATATGA AAAAGCATTA AAAATAATAC TTACAGAATA TACAAGAAGT GAAAATAAAC GAATAAAGGA CTTAAAAAGA AACATAAAAA AGAACTGGAA TAAATGGGAC AATATAATAG AATATATTAA AAATAATAAA ATAAACAGTA AAATGTTTGT CAACATTATA AAATATTTAA ATAATCCAGA ACGAAATAAC AACTATAAAG AAGCTTTTAA ATATGTTGAT AATCGATTAA AAAAGCTTTT TGTATTATCC TATCAAAGTT ATTTATGGAA TGAATGTATA AAGGAGCTCC TAAAAACTAA ACTACCAAAG GAACAAAGAA AATATGTAGA TTATAGCTGT GGAACATTCT TATATTATTC AAAAATAGAT AATGAATTAT TTAATACCTT AAAAAAAGAT AAATTCCCAA CCATCGCCCC CGATATAGAT TATAATAATC ATAAAGACGA ATACTATAAC ATAATATTAA AAATATTAAG AAAAGAACGA GCCTCTTTAA AAGATTTTAA TAATTTAATG GAATTAAATA AACTGTCTTA TGTGGAACGG GATATATTAA ATATTCCAAA AAATATTAAA TATGGGGATT TTGAGCCCGA TGAGTTTAAC AAAGGAAAAT ATAAAATAAC AATAGAATTT GAATTAAATA AAGGTAGTTA TGCCACCATA ATCATAAAAA GAATATTTAA TATTCAATAA
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Protein sequence | MKLRQTNGDF IVNEILDNEF IKENPSGNYS LYILKKSNIE NLKALNYISK NCNIPINDIG YCGLKDKYAI TTQYISIPTK YDKIELNEKN LTLKYLKTIN SPLKIGSLMG NSFKITVRAI DKNDFSNISK NLQNLEQGAP NYFDDQRFGS VFHNQFIAKY YLKGEYEKAL KIILTEYTRS ENKRIKDLKR NIKKNWNKWD NIIEYIKNNK INSKMFVNII KYLNNPERNN NYKEAFKYVD NRLKKLFVLS YQSYLWNECI KELLKTKLPK EQRKYVDYSC GTFLYYSKID NELFNTLKKD KFPTIAPDID YNNHKDEYYN IILKILRKER ASLKDFNNLM ELNKLSYVER DILNIPKNIK YGDFEPDEFN KGKYKITIEF ELNKGSYATI IIKRIFNIQ
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