| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCAP_0503 |
|---|
| Symbol | rpoD |
|---|
| ID | 3829106 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycoplasma capricolum subsp. capricolum ATCC 27343 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007633 |
|---|
| Strand | - |
|---|
| Start bp | 600156 |
|---|
| End bp | 601673 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 4 |
|---|
| GC content | 27% |
|---|
| IMG OID | 637823659 |
|---|
| Product | RNA polymerase sigma factor RpoD |
|---|
| Protein accession | YP_424476 |
|---|
| Protein GI | 83319868 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0103725 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAAT TTAATAATAA ATCAGAATTA AAAAAGATTG CTTCGTTTAA TGATTTTTTA
GATTATACAG TTTCATTTGC AAAAAAGAAT AATAATAAAG TTTCATCTGA AGAAATATTA
GAAGTTTTTG CTAATATTTT TCCAAATGCT TCAGATAATG AATCTGAAAA GTTATTAGAT
GTTTTACAAA ATAAAGGTGT GATTTTTTCA GATCTATTAG ATGATCTTGT AGTAGAAGAA
ATAGAACAAC ATGAAGAAGA AATTGAAGAA GTCAATTTAG ATGAACTTGA AGAATTAGAA
AATTTAGAAG ATCTAGAAGA TTTAGATTTT GAATTAGATA ATACTTCAAC TAGTTTAGGT
GATGATTTTG ATGTACATAT TAATGATGAT CTAGATGAAT TTAAGCAAGC AAAAAGCGCA
GCTCTTAGAG GAAGAAAATC TGCTAAATCT TCAAATCATA TGAAATATCG CGTTGGTGGT
ATTAGTAATG AAACTAAAAT TCAAGACATT ATTAAAACAT ATTTTTATAA AATAGGTCAA
GCTCCTATTT TGACAAAAGA TCAAGAAATA ATGTATGCTA AAATGGCAGT TAGTGATGAT
CCTGAAGATG TTAAAGAAGG TAGAAATAAA TTAATTGAAT CAAACTTAAA ACTAGTTATT
TCTGTTGCTA GAAAACATTT AAATCGTGGA TTAGATTTTG CAGATTTAAT TGAAGAAGGA
AATATTGGTT TAATGAAAGC TGTTGATAAA TTTGAATATG AAAAAGGATT TAAATTTTCA
ACTTATGCCA CTTGATGAAT TAGTCAAGCA ATAACAAGAG CTATTGCTGA TCAAGCAAGA
ACTATTAGAA TTCCAGTACA TATGGTTGAA ACAATCAACA AGCTAGCAAG AGTTGAACGT
CAATTAACTC AAGAATTAGG AAGAGAACCT AATGCTGAAG AAATTGCTAA TAGAGTTGGT
GAGGGTATAA CTTCTGATAA AGTTATTGAA ATTAAAAAAC TTTCAATTGA ACCAGTAAGT
TTAGAAAAAC CTTTTGGTGA TGAAGATGAT ACTCATTTTG GAGATTTTGT TGAAGATAAA
GATATGGTTT CTCCAAGTGA ATACACTGAA AAAGAAATTC TAAAAGAAGT TATGGATAAA
GTTTTTGAAG ATATGCCACC AAGAGAAGAA AAAGTTATTA GAATGAGATA TGGAATTGTT
CCAACAAGAT TAAGAACTTT ATTAAGACTT GCTCAAGAAT GCAATGATAC AAATGCTAAA
GAATTAAAAC AAGCAATTGA AGAATTAGAT ATTCATTTAG ATACACCAAT TGAAAAAGTT
AGAAAATTTA ATAATGAAAT AATTAATAAT AATCTAGCAA AATATGATTC AGCAAGAACT
TTAGAAGAAG TTGGAAAAGA ATTAAATGTT ACTAGAGAAA GAATCAGACA AATTGAAGCA
AAAACTATTA GAAAATTAAA GCAACCATCA CCAAATAATA AATCTGGAAA AACATTAAAA
GAATTTTATA AAGGATAG
|
|---|
| Protein sequence | MAKFNNKSEL KKIASFNDFL DYTVSFAKKN NNKVSSEEIL EVFANIFPNA SDNESEKLLD
VLQNKGVIFS DLLDDLVVEE IEQHEEEIEE VNLDELEELE NLEDLEDLDF ELDNTSTSLG
DDFDVHINDD LDEFKQAKSA ALRGRKSAKS SNHMKYRVGG ISNETKIQDI IKTYFYKIGQ
APILTKDQEI MYAKMAVSDD PEDVKEGRNK LIESNLKLVI SVARKHLNRG LDFADLIEEG
NIGLMKAVDK FEYEKGFKFS TYATWWISQA ITRAIADQAR TIRIPVHMVE TINKLARVER
QLTQELGREP NAEEIANRVG EGITSDKVIE IKKLSIEPVS LEKPFGDEDD THFGDFVEDK
DMVSPSEYTE KEILKEVMDK VFEDMPPREE KVIRMRYGIV PTRLRTLLRL AQECNDTNAK
ELKQAIEELD IHLDTPIEKV RKFNNEIINN NLAKYDSART LEEVGKELNV TRERIRQIEA
KTIRKLKQPS PNNKSGKTLK EFYKG
|
|---|
| |