| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA1976 |
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| Symbol | vacB |
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| ID | 3102196 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylococcus capsulatus str. Bath |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002977 |
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| Strand | - |
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| Start bp | 2125863 |
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| End bp | 2128130 |
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| Gene Length | 2268 bp |
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| Protein Length | 755 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637171130 |
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| Product | ribonuclease R |
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| Protein accession | YP_114408 |
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| Protein GI | 53803948 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAATACGT CTTCGGCCGC TGCGGCTTCC CGCGAGCGGG AATTCCGCCA CAAGGATCCG
TATGCCGAAC GTGAGGCGAG GAAGTACGAA CGCCCCATCC CCAGCAGGGA ATTGATTCTC
AAGGTGCTGC AGGACATCGG TGTGCCGGCC AACCTCGAGG AGGTCGCCGA TGCGCTCGGC
GTGGACGACG CCGAAGACCG TGAATCGTTG CGGCGTCGGC TCAATGCCAT GGAACGCGAC
GGGCAATTGT TGCGTAATCG CCGCGACCGT TTTTGCGTGG TCAATGCCAA GGATCTGATT
GCCGGTCGGG TGATCGGCCA TCCCGATGGC TTCGGTTTTC TCCATCCCGA CGACGGCAGC
GCCGACCTGT TCATCTCGCC GAAGGACATG CGCGCGTTGA TCCACGACGA CCGGGTGGTC
GTCAGTGTGC GCGGCATCGA CCGTCGGGGG CGGCGGGAAG CGGCGGTGGT CCAGGTTCTG
GAACGAAACA CCCACAGCAC CGTCGGCCGG CTCTACATAG AGAACGACAT CGCTTACGTC
GTTCCGGACA ACAAACGCAT CCCCCTCGAT ATCCTGGTTC CGGAAAATGC CCTCGCCGGT
GCCAGCCACG GCCAGATCGT CGTGGTCGAG ATCGTCGAGC AGCCGACCGC GCGGCGCGAA
CCCATCGGCC GGATCGTGGA GATCCTGGGT GACCACATGG CGCCCGGCAT GGAGATCGAG
GTCGCGATCC GCAATTACAA TCTGCCGAAC CAGTGGCCGG AAGATGTCGA GACCGTGATC
GCCAGTCTGG CTCCGGCGGT GCCGGAGGAG GCCAAGGCCG GTCGGATCGA TCTGCGCGAG
CTTCCCCTGG TCACCATCGA CGGCGAAGAC GCGCGCGATT TCGACGACGC CGTGTATTGC
CGCCGCACCC CCAAGGGCTG GAAGCTGTAT GTCGCGATCG CCGACGTTTC GTATTACGTC
AGGCCGGGCA CGGCTCTGGA CCGGGAGGCA CAGACCCGTG GTACTTCGGT GTATTTCCCC
GAACGGGTGA TTCCAATGCT GCCGGAGGTG CTGTCCAACG GGTTGTGTTC CCTCAATCCG
GAGGAAGACC GCTTGTGCAT GGTCTGCGAG ATGGTCCTGG ATGAAGACGG AAATATCGGC
CGCGCGAAGT TCTACGAAGC CGTGATGCGG TCTCATGCGC GCCTGACGTA CACCCAGGTC
GCGCGCATCC TGGTCGACGG CGACAAGGAG CTCAGGCGCC GTTACAAGGC ACTGGTACCG
CATCTGGAGA ACCTTTATTC GGTCTACCGG AATCTGCGGC GGGCGCGGGA GGAGCGCGGC
GCCATCGATT TCGAGACCCA GGAGTCCCGG ATCGTGTTCG GCGCCGGACG TAAGATCGAC
ACCATCATAC CGGTCGTGCG CAACGACGCC CATCGTCTCA TCGAGGAGTG CATGATCGCC
GCCAACATGG CGACGGCCCG CTTCCTCGCG AAGAAGAAGG TTCCGCATCT GCTGCGTGTC
CATGAGGGTC CGACGGCGGA GCGTCTGGCC GATCTGCGTA CCTTCCTTGG GGAGGTCGGC
CTGAACCTGG GCGGCGGAGA CAATCCAGAG CCCCGGCATT ATGCCGAGCT GATCGAAGCC
ATCCGGGGTC GTCCGGACGA GCACCTGGTG CAGACCGTGC TTCTGCGGTC GCTGGCGCAG
GCCGTCTACA GTCCGGACAA GAAAGGGCAT TTCGGTCTGG CTTCCGACGC CTATACCCAT
TTTACTTCGC CCATCCGGCG CTACCCCGAC CTGCTGACCC ATCGCGCCAT CAAGCATGCT
CTGAGCAAAG CCAAGGCCAG CGACTTTGCT TATTCCCACA ACGATCTGGT GCTGGCCGGC
GAGCATTGCT CGACCTGCGA GCGTCGCGCC GACGAGGCCA CCCGCGACGT GGTGAGCTGG
CTCAAATGCG AGTTCATGCT GGACAAGCTG GGTGAGGAAT TCGACGCCGT CATCTCGGCC
GTCACCTCGT TCGGCTTTTT CGCGGAACTG CGCGACATCT TCGTCGAGGG ACTGGTGCAC
ATTTCCAACC TCGACAAGGA TTTCTTCCAC TACGATCCCA TCGGTCATCG CCTCACCGGA
GAGCGCAGCG GCGTTCGATA CCGGCTGGGC GACACGGTGC GGGTCAAAGT CGCCCGGGTC
GATCTCGACG AGCGCAAGAT CGATCTCGAT CTGGTCAAGA AGACCGCGGA TGCCCCGGAG
CCGCGTTCCA AGCGCAGAAA GCGCAGCCGG AAGCGGGGCA AGAAATGA
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| Protein sequence | MNTSSAAAAS REREFRHKDP YAEREARKYE RPIPSRELIL KVLQDIGVPA NLEEVADALG
VDDAEDRESL RRRLNAMERD GQLLRNRRDR FCVVNAKDLI AGRVIGHPDG FGFLHPDDGS
ADLFISPKDM RALIHDDRVV VSVRGIDRRG RREAAVVQVL ERNTHSTVGR LYIENDIAYV
VPDNKRIPLD ILVPENALAG ASHGQIVVVE IVEQPTARRE PIGRIVEILG DHMAPGMEIE
VAIRNYNLPN QWPEDVETVI ASLAPAVPEE AKAGRIDLRE LPLVTIDGED ARDFDDAVYC
RRTPKGWKLY VAIADVSYYV RPGTALDREA QTRGTSVYFP ERVIPMLPEV LSNGLCSLNP
EEDRLCMVCE MVLDEDGNIG RAKFYEAVMR SHARLTYTQV ARILVDGDKE LRRRYKALVP
HLENLYSVYR NLRRAREERG AIDFETQESR IVFGAGRKID TIIPVVRNDA HRLIEECMIA
ANMATARFLA KKKVPHLLRV HEGPTAERLA DLRTFLGEVG LNLGGGDNPE PRHYAELIEA
IRGRPDEHLV QTVLLRSLAQ AVYSPDKKGH FGLASDAYTH FTSPIRRYPD LLTHRAIKHA
LSKAKASDFA YSHNDLVLAG EHCSTCERRA DEATRDVVSW LKCEFMLDKL GEEFDAVISA
VTSFGFFAEL RDIFVEGLVH ISNLDKDFFH YDPIGHRLTG ERSGVRYRLG DTVRVKVARV
DLDERKIDLD LVKKTADAPE PRSKRRKRSR KRGKK
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