| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA1749 |
|---|
| Symbol | speD |
|---|
| ID | 3102622 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylococcus capsulatus str. Bath |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002977 |
|---|
| Strand | - |
|---|
| Start bp | 1865689 |
|---|
| End bp | 1866528 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637170910 |
|---|
| Product | S-adenosylmethionine decarboxylase |
|---|
| Protein accession | YP_114188 |
|---|
| Protein GI | 53803907 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1586] S-adenosylmethionine decarboxylase |
|---|
| TIGRFAM ID | [TIGR03331] S-adenosylmethionine decarboxylase proenzyme, Escherichia coli form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.163697 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTGGCAGA TATTCCTGGC GGGGTCATAT CGGAAATTGA TGGATAACAA GCTGCAATTA
CACGGGTTCA ACAACCTGAC CAAATCGCTG AGCTTCAACA TCTACGACAT TTGCTATGCA
AAGTCGGAAG CCGGCCAGCG CCGCTACATC GAGTACATCG ACGAGGCCTA CAGCGCCAAG
CGTCTGACTC AGATACTCAC CGATGTCAAC GCCATCATCG GCGCGGAGAT CCTGAACATC
GCGCGCCAGG ATTACGAGCC GCAGGGTGCC AGCGTGACGA TGCTGATCTC GGAAGGGCAC
GAGGCTCCGG CGGCCATCAC CAATTCCGAG TCGCCCGGCC CGATGCCGGA GGCCGTGGTG
GCGCATCTGA ACAAGAGCCA CATCACGGTG CACACTTATC CGGAGAGCCA CCCGCATGCC
GGTATCAGCA CCTTCCGCGC CGACATCGAC GTCTCCACCT GCGGCCGCAT CTCGCCGCTG
AAGGCGCTGA ACTACCTGAT CCACAGCTTC GAATCGGACA TCGTGATCAT GGATTACCGG
GTGCGCGGCT TCACCCGTGA CATCAGCGGC CAGAAGCATT ACATCGACCA TGACATCACC
TCGATCCAGA ACTATATCTC CGATGCCACG GCGGACCGCT ATCAGATGAT CGACGTGAAC
GTTTATCAGG AAAAGATCTT TCACACCAAG ATGATCCTGA AGGACTTCAA TCTCGACAAC
TACCTGTTCG AGACCGACAA GGACCAGCTG GTGCCGGAGG AACGCGCCCA CGTGCAGAAG
CAGCTTCAGC GGGAGATGGC GGAAATCTTC TACGGCCGCA ATTACAAGCT GCGGCGCTGA
|
|---|
| Protein sequence | MWQIFLAGSY RKLMDNKLQL HGFNNLTKSL SFNIYDICYA KSEAGQRRYI EYIDEAYSAK
RLTQILTDVN AIIGAEILNI ARQDYEPQGA SVTMLISEGH EAPAAITNSE SPGPMPEAVV
AHLNKSHITV HTYPESHPHA GISTFRADID VSTCGRISPL KALNYLIHSF ESDIVIMDYR
VRGFTRDISG QKHYIDHDIT SIQNYISDAT ADRYQMIDVN VYQEKIFHTK MILKDFNLDN
YLFETDKDQL VPEERAHVQK QLQREMAEIF YGRNYKLRR
|
|---|
| |