| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA1472 |
|---|
| Symbol | nadB |
|---|
| ID | 3104515 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylococcus capsulatus str. Bath |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002977 |
|---|
| Strand | + |
|---|
| Start bp | 1562203 |
|---|
| End bp | 1563804 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637170647 |
|---|
| Product | L-aspartate oxidase |
|---|
| Protein accession | YP_113929 |
|---|
| Protein GI | 53804460 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0029] Aspartate oxidase |
|---|
| TIGRFAM ID | [TIGR00551] L-aspartate oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACAAGG ACATCACCTA CGACGCGCTC ATCATCGGCA GCGGCGCTTC GGGTCTCAGC
CTGGCTCTGA GGCTCGCCGA CCGGGCCCGG GTCGCTGTCC TGTCGAAGGT CGCCCTGAGT
GAAGGCAACA CCCGCTACGC CCAAGGCGGC ATTTCCGCGG TCCTGGATGC CCAGGACTCA
CTCGAATCGC ATATTGAAGA CACGCTGGCG GCCGGTGCCG GTCTGTGCGA TTCGGACATC
GTGCGCCTGG TGGTCTCCCA AGGCAAGGAG TGCATCGACT GGCTGCTCCA GCACGGGGTC
GCCTTCACCG AAGTCGAAAG CACCGACGGC GCCCATCATC TGCATCTGAC CCGGGAAGGC
GGACACACCC ACCGGCGGGT CGTGCATGCC GCCGACGCCA CTGGTCGGGC CGTGGAGTCA
TCGCTGGAGC AACATGCCCG GGCCCATCCC AGCATCGACC TGTTCGAATA CCACAACGTC
ATCGACCTGA TCACCTCCCG CAAGCTCGGC CTCGCCGGCC CGCAACGCGT GCTGGGCGCC
TACGCGCTGG ATACGAGAAC CCACCGTACC CGCACGTTCC GCGCGCGCGT CATTGCGCTG
GCGACCGGTG GTGCCAGCAA GGTATATCTT TACACCAGCA ATCCCGACGT TTCCACCGGC
GACGGCATCG CCTTGGCCTG GCGGGCCGGT GCGCGAGTGG CGAACATGGA ATTCATTCAA
TTCCACCCTA CCTGTCTCTA TCATCCCCAC GCCCGGTCGT TTCTGATTTC CGAGGCGGTG
CGCGGAGAAG GCGGCCGCTT GCTGTTGCCC GATGGCAGCC CCTTCATGCA GCGGTTCGAT
CCGCGTGGTG AACTGGCTCC CCGTGACATC GTGGCGCGCG CCATCGACCA TGAAATGAAA
CGCCTCGGCG CCGATTGTGT CTACCTCGAC ATCAGCCATC GGCCGGCCGA TTTCATCACG
AGCCATTTCC CGACGATTCA TGCACGCTGT CTGGAATTGG GGATCGACAT GACCCGTGAG
CCCATCCCGG TGGTGCCCGC AGCCCATTAC ACGTGTGGCG GAGTGGTGAC CGACCGGCTG
GCGCGGACGG ACATCGATGG CCTTTACGCA GTCGGCGAGG TGGCCTGCAC CGGCCTCCAC
GGCGCCAACC GCATGGCCAG CAATTCTCTG CTCGAATGCC TGGTCTTCGC CAAGCAGGCC
AGCCTGGACA TCCTGCAGCG TCTGAGCGAG ATTCCTGCCC CTCCGCCGCT GCCGGACTGG
GACGAGTCGC AGGTCACGGA CTCCGACGAA GAAGTCGTCG TGTCCCACAA CTGGGACGAA
ATCCGGCGCT TCATGTGGGA CTACGTCGGG ATCGTCCGGA CCGACAAACG ACTGCAGCGC
GCCCTGCACC GGGCGGAGCT GCTCAAGCAG GAGATCGCCG AGTACTACGG CAACTTCCGC
GTCACCAGCG ATCTGCTGGA GCTTCGGAAC CTGATCATCG TGGCCGAACT CATCATCCGT
TCGGCCCTCC TGCGGAAGGA AAGCCGTGGG CTGCATTTCA CGCTGGACTA TCCGGAGCGG
GACGAGACCC GCCCGCCGCG GAACACCATA CTCCAGCCCT AA
|
|---|
| Protein sequence | MDKDITYDAL IIGSGASGLS LALRLADRAR VAVLSKVALS EGNTRYAQGG ISAVLDAQDS
LESHIEDTLA AGAGLCDSDI VRLVVSQGKE CIDWLLQHGV AFTEVESTDG AHHLHLTREG
GHTHRRVVHA ADATGRAVES SLEQHARAHP SIDLFEYHNV IDLITSRKLG LAGPQRVLGA
YALDTRTHRT RTFRARVIAL ATGGASKVYL YTSNPDVSTG DGIALAWRAG ARVANMEFIQ
FHPTCLYHPH ARSFLISEAV RGEGGRLLLP DGSPFMQRFD PRGELAPRDI VARAIDHEMK
RLGADCVYLD ISHRPADFIT SHFPTIHARC LELGIDMTRE PIPVVPAAHY TCGGVVTDRL
ARTDIDGLYA VGEVACTGLH GANRMASNSL LECLVFAKQA SLDILQRLSE IPAPPPLPDW
DESQVTDSDE EVVVSHNWDE IRRFMWDYVG IVRTDKRLQR ALHRAELLKQ EIAEYYGNFR
VTSDLLELRN LIIVAELIIR SALLRKESRG LHFTLDYPER DETRPPRNTI LQP
|
|---|
| |