Gene MCA0964 details

Gene Information

• Locus tag: MCA0964
• Symbol: msbA
• ID: 3103805
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylococcus capsulatus str. Bath
• Kingdom: Bacteria
• Replicon accession: NC_002977
• Strand: +
• Start bp: 1007963
• End bp: 1009768
• Gene Length: 1806 bp
• Protein Length: 601 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 637170153
• Product: lipid A export ATP-binding/permease protein MsbA
• Protein accession: YP_113444
• Protein GI: 53804677
• COG category: [V] Defense mechanisms
• COG ID: [COG1132] ABC-type multidrug transport system, ATPase and permease components
• TIGRFAM ID: [TIGR02203] lipid A export permease/ATP-binding protein MsbA

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.519828
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACATT CAGCTTCGGA GTCCAAGCCG CTGTCGAGCG GACTGGCCAT CTACCGCCGC 
CTGCTCCGCT ATGGATTTCC GTACTGGAGG TCGTTCTGCG TCGCCGTGGT GGCGATGATC 
GCCTATGCCG CCATCACGCC CTTCTTTGCC AAGCTGATCC AGCCGCTGAT CGACGGCAGC 
TTCATCGACA ACGATCCGAC GGTGCTGCGC CAGGTGTCCC TGATGCTGAT CGGCCTTTCC 
GTCCTGCGCG GCATCGCCGG CTTCCTGAGC GAATACTGCT CCGGTTCGGT CGGGCGGCGC 
GTGATCGCCG ATCTGCGCCG GGACATTTTC GACCAACTGC TGAATCTGCC CTGCAGCTTT 
TATGACAACG CTTCGGGCGG CCAGCTCCTC TCCAAACTGC TCTATAACAC CGAACAGGTA 
TCGGCGTCGC TCCAGCAAGG CATCATCACC TGCATCCGCG AAGGCTTCAC CGTCATCGGT 
CTGATGGCGC TGATGGTTTA TCAGAACCCG GTGCTGTCCC TGGTCTTTCT GGTGCTGGGG 
CCGGTGCTGG GGCTGAGCGT CCGCTTCGTG AGCAAGCGGT TCCGCCGCCT GAGCATGCGC 
ATCCAGGAAT CCATGGGCAA GGTGAGCCAT GTGACACAGG AAGTGATCGA TGCCCAGCGC 
ATCGTCAAGG TGTTCAACGG CAAGGACTAC GAGGCCGCCA AGTTCGCGAC GGAAAACGAC 
CGCAACCAGA AGCGGCAGAT GAAGCTGATC GCCACCGATG CTCTGGGCGG CGGGGTGATC 
CATCTCATCA GCGTCGCCGG TGTGGCGGGC ATCCTCTACG TCGTGTCGCT CGATTCCGTG 
CGGCAGACGA TCACGCCGGG CAGTCTCATG GCGTTCATCG CGGCGATGGC CATGATGCTG 
AGCCCCATCC GCCGTCTCAG CCAAGTGGTG TCGGTCATGC AGCGTGGCAT CGCCGCCGGC 
GACAGCATCT TTGCCATGCT CGACTTGCCG AGGGAGCGCG ACCGCGGCCG AATCAGCCTG 
AAGCGCGCCC GCGGTTCGAT CGAGTATCGG CACGTCAGTC TGGTGTATGA CGACCGTCAC 
GGCGCTGCGG TCGACGACGT ATCACTCGTC ATCCCGGCTG GCAAGACCGT GGCCCTGGTG 
GGCCAGTCGG GCAGCGGGAA GACGTCGCTG GTGCGCCTCC TGCCGCGTCT TTACGAGGCG 
ACGGCCGGGG AAATCCTGAT CGACGGGCAC GACATCCGCG AACTGACGCT GGAGAGCCTG 
CGCCGCCAGA TTGCTTATGT CGGGCAGGAA GTGACGCTGT TCAACGATAC CGTTGCCAGC 
AACATCGCCT ACGGCTGCCT GGACAGGGTG GGCCTCGATG CCGTGCGCGA GGCCGCGCGG 
GCGGCGAATG CGCTGGATTT CATAGAGACG CTGCCGCAAG GATTCGATAC CCTCGTCGGC 
CAGCAGGGCA TCGTTCTGTC GGGCGGCCAG CGTCAGCGTA TTGCCATTGC GCGGGCCTTG 
CTTAAAAATG CCCCTATTCT GATCCTGGAC GAGGCGACCT CGGCGCTGGA CGCGGAATCC 
GAGCGCTACG TGCAGCAGGC GCTGGAAGTC CTGATGCAGA ACCGGACGAC ACTGGTGATC 
GCGCACCGGC TGTCCACCAT CCAGAATGCG GACCAGATTT GCGTGATGCG CGGCGGGCGT 
ATCATCGAGT GCGGCACCCA TGCCCAGCTC ATGGCGGCGC GGGGCGGTTA TGCCGACCTC 
TACGCGATGC AATTCGGCTA TTCGAGCGTG CCGGAAGCGG TGGCGGTGCA CGCCGTGCGC 
CGCTGA 

 

Protein sequence

MKHSASESKP LSSGLAIYRR LLRYGFPYWR SFCVAVVAMI AYAAITPFFA KLIQPLIDGS 
FIDNDPTVLR QVSLMLIGLS VLRGIAGFLS EYCSGSVGRR VIADLRRDIF DQLLNLPCSF 
YDNASGGQLL SKLLYNTEQV SASLQQGIIT CIREGFTVIG LMALMVYQNP VLSLVFLVLG 
PVLGLSVRFV SKRFRRLSMR IQESMGKVSH VTQEVIDAQR IVKVFNGKDY EAAKFATEND 
RNQKRQMKLI ATDALGGGVI HLISVAGVAG ILYVVSLDSV RQTITPGSLM AFIAAMAMML 
SPIRRLSQVV SVMQRGIAAG DSIFAMLDLP RERDRGRISL KRARGSIEYR HVSLVYDDRH 
GAAVDDVSLV IPAGKTVALV GQSGSGKTSL VRLLPRLYEA TAGEILIDGH DIRELTLESL 
RRQIAYVGQE VTLFNDTVAS NIAYGCLDRV GLDAVREAAR AANALDFIET LPQGFDTLVG 
QQGIVLSGGQ RQRIAIARAL LKNAPILILD EATSALDAES ERYVQQALEV LMQNRTTLVI 
AHRLSTIQNA DQICVMRGGR IIECGTHAQL MAARGGYADL YAMQFGYSSV PEAVAVHAVR 
R