Gene MCA0325 details

Gene Information

• Locus tag: MCA0325
• Symbol: pilM
• ID: 3102784
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylococcus capsulatus str. Bath
• Kingdom: Bacteria
• Replicon accession: NC_002977
• Strand: +
• Start bp: 320584
• End bp: 321726
• Gene Length: 1143 bp
• Protein Length: 380 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637169545
• Product: type 4 fimbrial biogenesis protein PilM
• Protein accession: YP_112857
• Protein GI: 53802363
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4972] Tfp pilus assembly protein, ATPase PilM
• TIGRFAM ID: [TIGR01175] type IV pilus assembly protein PilM

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAATTATC AAAGATGTCG TTTTCCAGTA GCATGTTGCG GCTTTCCGAG CTCCGTTCCA 
TTTTCCGGTG ACATGTCAGC CATGTGGGGC CTAGGAAGGA AGAAACCGCT CCTGCTGGGG 
ATCGACATCA GCGCGGCGGC GGTCAAGCTG CTCGAGCTGA GCAGAAAGAA CGGCGGCTAC 
CAGGTGGAAA GCTATGGCGT TGTGCCTTTG CCCCGCAACA CGGTGGTCGA CAACACCCTT 
GCCGAGCCGG ACAACGTGTC GGCGGCGGTC CGGGCCGTGG TCAAACAGTC GGGGACCGCG 
CTCAGGCACG CGGTGGTCGC GGTGCCCGGC TCGGTGGTCA TCACCAAGCG CATCGCCCTA 
CCCGCCAACC TGGAGGGCGA CGAACTCGAG GCGCAGATCG AACTGGAGGC GGACCAGTAC 
ATTCCTCACG CCAGGGAGGA AGTCAGCCTG GATTTCGAGG TACTGGGGAA GAATCCGAAG 
AATCCCGATC TGCTGGATGT GCTGCTGGTG GCGACCCGCC GGGAGAACGT GGAAGACCGG 
GTCTCGGTAC TGGAAAATGC CGGACTCGGC GTCGAGATCG TCGATGTCGA GTCCTATGCC 
ATCGAACGCG CCTTCGAACT TGTCCGGGAT CAGCTTCCAC CGCTCCTCCG CGACCGGGCG 
GTTGCCGTAG CCGATGTGGG CGCCATGGCC ACGACGCTCA ACGTCATCCA TGGCGGTTCC 
ATCATCTACA CGCGGGAACA GGGTTTCGGC GGCATGCAGC TCACCGACGA GATCCAGCGG 
CGCTACGGTT TGACCTACGA GGAAGCGGGG CTGGCGAAGA AGGAGGGGAG CCTTCCCGGC 
AACTATGCCG AAGAGGTGCT GGAGCCGTTC AAGCATGCCT TGGTTCAGCA GATCAGCCGA 
TCGTTCCAGT TCTATCTGTC GTCCACTGCG CAGCGTGGTT TCGATGCGGT GGTGCTGGCC 
GGCGGCTGCG CCATGATTCC GGGGATAGAC CGTTACGTCG AGGCGGCGTT GCAGGTTCCC 
ACCGTGATTG CCAATCCCTT CCGTCACATG AGTTTTTCGG GAAGGGTGCG GCAGGAGCGC 
CTGAGTTACG ATTCATCCGC CCTGATGCTG GCATGCGGCC TGGCACTGCG GAGTTTCGAC 
TGA 

 

Protein sequence

MNYQRCRFPV ACCGFPSSVP FSGDMSAMWG LGRKKPLLLG IDISAAAVKL LELSRKNGGY 
QVESYGVVPL PRNTVVDNTL AEPDNVSAAV RAVVKQSGTA LRHAVVAVPG SVVITKRIAL 
PANLEGDELE AQIELEADQY IPHAREEVSL DFEVLGKNPK NPDLLDVLLV ATRRENVEDR 
VSVLENAGLG VEIVDVESYA IERAFELVRD QLPPLLRDRA VAVADVGAMA TTLNVIHGGS 
IIYTREQGFG GMQLTDEIQR RYGLTYEEAG LAKKEGSLPG NYAEEVLEPF KHALVQQISR 
SFQFYLSSTA QRGFDAVVLA GGCAMIPGID RYVEAALQVP TVIANPFRHM SFSGRVRQER 
LSYDSSALML ACGLALRSFD