Gene MADE_03893 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_03893 
Symbol 
ID6777399 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand+ 
Start bp4193120 
End bp4194211 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content46% 
IMG OID642757344 
Productputative beta-lactamase 
Protein accessionYP_002128177 
Protein GI196158688 
COG category[V] Defense mechanisms 
COG ID[COG1680] Beta-lactamase class C and other penicillin binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.616435 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTATTCG TAGTTTCACA AAGCGCCGCC GCTGATTGGC TAGACGATTA CGCAAGCCAC 
GTAAAAAAAG AAGCGTCTAA GTATAACGTG CCTGGCTATG CCTTTGTTTT TTACGAACAA 
GGCAAAGCGC CAAGAGTTTA TGTGTATGGC AGAACACAAA AAAAAGGCGG TGAAAGCGTT 
ACGCAAGATA CTGTGTTCCG TTTAGCCTCT GTCTCGAAAA CCTTTACCGC GTTGCTTTCA 
GCCAAACTCG TAGAGAAAAA GCAGTTAAGC TGGGAAACCC CAATATCTAC GTTATTACCC 
GACATTCCAT TTAACGGAAA AGGGATGGGA GCGCTACAGT TACAGCATAT AGTGGGCCAA 
TCCAGTGGCT TTATGCCAAA CGCTTACGAC AATCTTATCG AGGCAGACTA CTCATTAGAA 
CGGGTACTTA AATCACTTGG CGAACTTGAG CCTCTGTGTG TACCCGGCGA GTGTTATACC 
TATCAAAATG CTCTTTTCGG TGCCCTAGAA TATTACTTCA GCAACAACAA TACGTCGTAC 
TCACGACAAA TGCAGGCTAA TTTATTCACG CCGTTAGGAA TGAATACAGC AAGCGTAGGC 
AAAGGTGGCC TGTTAGCGTC AGACAGCTGG GCACACCCTC ATATTGCTAT TGCCAGAAAC 
AAGTGGCGTG AAGGTAAAGT TGAAAGTAAC TATTACCGTT TTTCTCCCGC TGCTGGCGTA 
AACGCTAGCA TTTCAGACAT GACCATTTAC TTGCAGGCAT TGCTTGGTGA ATTTCCTACC 
GTTATGTCGA AAGAAATGGT GGACTTTGTT ACCACTGAGC GAGTTAGAAC TAAGCGCGAA 
ACCTATCGTC GAGGCTGGCG CGGCATGATT GACGACGCTC ACTATGGACT AGGCTGGCGT 
ATTTACGATA TAAACGGTAT GAAACTGAAT TACCACGGTG GCTGGGTGAA AGGCTATCGC 
GCTGATGTTG CGTTTTCACC AGAGCGCAAG GTAGGCTACG TTATGCTGAT GAACGCTGAG 
TCAAATATGA TTAATTCCGC CACGGCTGAA CTATGGAAGC GCTACTTGAA AAAAGCCGAC 
GCAGCTAATT AA
 
Protein sequence
MLFVVSQSAA ADWLDDYASH VKKEASKYNV PGYAFVFYEQ GKAPRVYVYG RTQKKGGESV 
TQDTVFRLAS VSKTFTALLS AKLVEKKQLS WETPISTLLP DIPFNGKGMG ALQLQHIVGQ 
SSGFMPNAYD NLIEADYSLE RVLKSLGELE PLCVPGECYT YQNALFGALE YYFSNNNTSY 
SRQMQANLFT PLGMNTASVG KGGLLASDSW AHPHIAIARN KWREGKVESN YYRFSPAAGV 
NASISDMTIY LQALLGEFPT VMSKEMVDFV TTERVRTKRE TYRRGWRGMI DDAHYGLGWR 
IYDINGMKLN YHGGWVKGYR ADVAFSPERK VGYVMLMNAE SNMINSATAE LWKRYLKKAD 
AAN