| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03558 |
|---|
| Symbol | |
|---|
| ID | 6778053 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 3835522 |
|---|
| End bp | 3837690 |
|---|
| Gene Length | 2169 bp |
|---|
| Protein Length | 722 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642757006 |
|---|
| Product | putative sensor histidine kinase |
|---|
| Protein accession | YP_002127844 |
|---|
| Protein GI | 196158355 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGATTTC GCTTTTCTAT TCGCCTTCAG CTTATGGTGC TGTCGCTGTT TTTGTTCACC
ATCCCCTACC TGGGTTACAA CTACGTGTGG GAGCTTGAGC AGTACCTGCG TAACGGCCAA
GAACAAACCA TGATTGGCAC CGCCCGCGCT GTTGCCACCG CACTTCATGA ACGTCCTGCG
CTTTTTGATA GCCAATCGGC ATACCTTCAA GACGTACGCC CCGGCACTGA TCTTTACGCC
CTGCCTATTC CGTCGCCCAT TCGCCTTGAT GGCGAACTCA ACGACTGGCA GCAAGTCAGT
GAGTTAATAA GTGAATATGA TGGTGATGAG GTTATCGAGT ATTACAACGG GTACGACGGC
AAGCCGACCA GCTTGTCTTT TACACACATG GTAGGCCGCT ATGGGCAGTT TCTTTATGCC
ATGTTTGAAG TTAGCGATGA CACTCTGTTA TGGCGTCAGC CCAATAGTTT AAGCGTCGAA
ACCGGCGACC ACCTGCTGAT TGGCATGGAA ACGCCACAAG GTGAATTGGC AAGATATGTT
GTTGCGCCGT ATGAAAGCGG TTGGGTTAAC GCCTATAAGT TAGCGAAAAA CACTACAACG
ACGCGAGCGG TAGAGAACGC GCTATCGATA CAAGGCCGCT GGCAAGAAAC CGCGACAGGT
TACAACATTG AGCTACGCTT TCCGCTGTCG ATGACCACTG GCGGTTTAGC TTTTACCCTC
GTCGATGTAG ATAATAGTAC GAACCGGCTT AAGCAGTACG CGTTAGGTAG CGCTAACACT
AAGGTGCTTA GTGAGCTTGG CACGGTTATC ACCCCCTCCC CCGAAATAGA GCGCATACTG
GCTGGGCTAA AATATGCCGA CTCTCGCGTA TGGGTGGTAG ATAAACACAA GCGAGTACTC
GCCCGCGCTG GCGATATTCA GTCAGCAACG GGTATTGAAG TGGATAAAAA AGAATCACCG
TCTAACCCCG TTTGGCACTG GGTTGAAAGT AAGTGGTTAC TTCCTCTTTA TTACCAAATT
CTTACACGCC CACCGGCTGA CTTTATTGAC GAGCTTGACG ACGCATACGC CCTTGTAGGG
CAAGACTTAG GCACCGTACT GAACGGTCAG CCCGAGTCAT TATGGCGCTT GTCACCTGAT
AACAAAGCCA TAGTACTTTC CGCCGCCTAC CCTATTTTTA TTGAAGGTAA CGTAATGGGC
GCGGTTATCG TTGAGCAAAC GACAAACGGC ATACGCACGT TAAGAAACCG TGCATTAGAA
CAGTTATTTC ACGTGATATT AGCGGTGATG AGTATAGGTA CCTTAGGCCT GCTGCTGTTT
GCTACGCGCA TTTCCAATCG CATTCGCTCG CTGAGAGATG ATACTGAAGC CGTTATTGAC
GATAACGGAA AAATTATTGG CACCTTGCCG GCATCTAATC AGCGAGATGA AATTGGCGAC
CTATCCCGCT CTTTCGCCGA TGTTCTTTCA CGCTTGCAGC AATATAACTC CTATTTGGAA
AATATGGCGT CACGTTTATC TCACGAGCTA AGAACGCCTA TTGCAGTGGT AAAATCGTCA
CTAGATATGC TTTCTCATGT TAACGACACG TCGCAACAAG CGGTATTCGT AGAGCGCGCT
CAGTCTGGTG TGAATCGCTT AAGCACTATC TTAAACAGCA TGAGTGAAGC GACCCGCCTT
GAACAAGCCA TTGCTCAAGA AGATATGGCC CAGTTTAATA TTGTTGAAGT AATACAGGGG
TGCGTTGAAG GTTATAAACA CGCTTATGCG CAAAGGATTT GGCGCTTTTC AACGTCAGAT
AATACGCTAC CCGTTTATGG CTCTGCTGAG TTAGTGGCTC AACTCTTTGA TAAGGTTATT
TCAAACGCGG TAGATTTCAG CCAAGACAAC GACGAAATTG TGATTTCTCT TGAAAAAAAA
GACAAGCAGG TGTTTTTGAG CGTAAGCAAC CCTGGTCCGT TATTGCCACA AGGTATGAAA
AGCCAGCTAA CCCAGTCTAT GGTATCGGTT AGAAAAGAAA ACGAGATGCA AAATACCACT
CACTCCCCCC ATTTAGGTCT CGGCCTGTAC ATCGCTAATA TGATTGCAAA TTTTCATAAG
GGCCAGCTTT TACTGAACGA CAAGACAGAT GGCACTGGGG TTATTGTCAC TATTACTTTC
CCATTATGA
|
|---|
| Protein sequence | MGFRFSIRLQ LMVLSLFLFT IPYLGYNYVW ELEQYLRNGQ EQTMIGTARA VATALHERPA
LFDSQSAYLQ DVRPGTDLYA LPIPSPIRLD GELNDWQQVS ELISEYDGDE VIEYYNGYDG
KPTSLSFTHM VGRYGQFLYA MFEVSDDTLL WRQPNSLSVE TGDHLLIGME TPQGELARYV
VAPYESGWVN AYKLAKNTTT TRAVENALSI QGRWQETATG YNIELRFPLS MTTGGLAFTL
VDVDNSTNRL KQYALGSANT KVLSELGTVI TPSPEIERIL AGLKYADSRV WVVDKHKRVL
ARAGDIQSAT GIEVDKKESP SNPVWHWVES KWLLPLYYQI LTRPPADFID ELDDAYALVG
QDLGTVLNGQ PESLWRLSPD NKAIVLSAAY PIFIEGNVMG AVIVEQTTNG IRTLRNRALE
QLFHVILAVM SIGTLGLLLF ATRISNRIRS LRDDTEAVID DNGKIIGTLP ASNQRDEIGD
LSRSFADVLS RLQQYNSYLE NMASRLSHEL RTPIAVVKSS LDMLSHVNDT SQQAVFVERA
QSGVNRLSTI LNSMSEATRL EQAIAQEDMA QFNIVEVIQG CVEGYKHAYA QRIWRFSTSD
NTLPVYGSAE LVAQLFDKVI SNAVDFSQDN DEIVISLEKK DKQVFLSVSN PGPLLPQGMK
SQLTQSMVSV RKENEMQNTT HSPHLGLGLY IANMIANFHK GQLLLNDKTD GTGVIVTITF
PL
|
|---|
| |