| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03544 |
|---|
| Symbol | |
|---|
| ID | 6777990 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 3822334 |
|---|
| End bp | 3823050 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 642756992 |
|---|
| Product | sugar fermentation stimulation protein |
|---|
| Protein accession | YP_002127830 |
|---|
| Protein GI | 196158341 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1489] DNA-binding protein, stimulates sugar fermentation |
|---|
| TIGRFAM ID | [TIGR00230] sugar fermentation stimulation protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00902092 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTTT CACCTTCTTT ACTACGCGGT ACGCTTATAA AAAGGTACAA GCGTTTTTTT
GCTGACGTCG AACTTGAAGA CGGTACTATT GTTACCGCTC ATTGCCCTAA TACTGGTGCT
ATGAGTGGCT GCGCTGAGCC TGGCTATACG GTGTTTCTTA GCGAGTCGAC TAACCCTAAA
CGAAAGCTTA AATACACATG GGAACTCGCG CAAACTTTTG ACGGCCATTT CATCGGCATT
AATACGCACA ATGCTAATAA GTTGGTGGCG GAAGCACTCG ATAACAAGGT ACTGAAGGAA
TTTTCTGATA TAACACGGTG GAAAGCAGAA GTAACACCAC CGACAGCGAA TAGTCGCTTC
GACTTTGCGC TTGAGCGCGA AAATACTCAA CACCAAGGTA TAATCGAGTA TATGGAAGTT
AAATCCGTCA CCTTAGCGGA AAACTCGAAA GGCTTTTTTC CCGATGCGGT AACCCAGCGC
GGCGCGAAAC ATTGTTTAGA GCTTGCTCGT CTTGCTGAAA GTGGTATAAA GACCAGCCTA
TTGTTTTGCG TTCAGCATAC AGCAATAGAA AGTGTTCAAG TTGCTGAGTA CATTGATCCA
ACTTACGCTG AAAGCGTAAA GAAAGCCGCT GACGCAGGCG TATCCTTACT TGCCGCAAGC
TGCATAATAG ACGAACAAAA AATCCTATTA AATCAAACAC TCCCTTTAAT TTTGTAA
|
|---|
| Protein sequence | MKFSPSLLRG TLIKRYKRFF ADVELEDGTI VTAHCPNTGA MSGCAEPGYT VFLSESTNPK
RKLKYTWELA QTFDGHFIGI NTHNANKLVA EALDNKVLKE FSDITRWKAE VTPPTANSRF
DFALERENTQ HQGIIEYMEV KSVTLAENSK GFFPDAVTQR GAKHCLELAR LAESGIKTSL
LFCVQHTAIE SVQVAEYIDP TYAESVKKAA DAGVSLLAAS CIIDEQKILL NQTLPLIL
|
|---|
| |