| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02992 |
|---|
| Symbol | |
|---|
| ID | 6777490 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 3245612 |
|---|
| End bp | 3248137 |
|---|
| Gene Length | 2526 bp |
|---|
| Protein Length | 841 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 642756443 |
|---|
| Product | type IV pilus assembly PilZ |
|---|
| Protein accession | YP_002127282 |
|---|
| Protein GI | 196157793 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.488872 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAAG ATTTAAAGCA GTACGCTGAT ATTATTGAAC AGCTAAAGCC TATGGTGAAC
GAACCCGAGT TCAACCAGGT GTTGCTTCAA ACTGCTGCAG ACGTCCCTAA GGAAAAACGC
TTTCTAATAA AAATGGAAGT AAAGCGTCTA GCCAAACCCT GTATGCGTAC TATCGATTTG
CGCGGTCATG TAGACGGTAA ATGCAAAAAA TATGTCCATG AAGGGCGAAG TCATTATATG
GACGACTTAG CGGTTGATAA ATTTGAAGAG CAGATACGCG TGTTTGGCCG CTACACTTAT
GGCGTGTATG AGGCGGTACA AAATACGGAA AACAATTTCC GCTTAATACG CGAAAAAGAA
CTTGCTCAAG AGCGGGCACA CAAAGAAAAT CCTACGGCCA AGAAGCGCTC TGCCGTGTTA
GAGCAATTCA AAGTGCCAAC GGTGAACCTT CTCGATTATC GACAGCGCAA TACAGAGCGA
ATGAATTTCG CAGTGGCCGT AGAAGTTTTT AATAACGCCG GCCAAGCAAT GCGCGGGCTG
AGTGTTGATA TTTCCCTCGA AGGTTTACAG ATAAAACTCG CAAAAGACGC TTTTTTTAAA
ACCGGGGAAA CCCTTTTTAT CTTTTTTAGG GGTCTTGAAA ACGAATTTGC CATGGATAAA
AAAAATGGCA TAGCGTACAA ACTCGTTAAA ATAATAACGA AAAACGATGT GAACTATCTT
GCGCTACAGC GGGATAAAGA TTGCCCCAGC CCAGCATTTG ACAAGTTTTT AGAAAGCTTT
ATACACGGCA ACAAACGTCG TTATAAAGTG AACATGAGCA ATACAATAGA AGCGATAACC
AGCAAAACCT GCGAACAATA CTTCTCACCA AGAAGCCCAA CGCTTCCTGT CTATATCGAT
GTTATTAACA AAACATTAGT ACCCCGCTTT GCGATGGTAA ACGAGGTAAA TAGAGAAACA
GTACAGTATT GGCAAGACGA AGAAGAAAAC TGTCGGCTAA ACTTTTTGCT AACACAAGAG
CGACTTATGC GGCTTTTAAA TAAGTCTGAT GAAGTGCGCG AAATTTTTGT ATTCAGCTTC
ACCCACCTAC ACAGTGATAA AGTATACTTT TACTCGGCGT CTTTCGAGGA GTTGTTGCAA
AAAGACATTC TGCTTAAGGT CTTCTTAGGC TTTGGCTCAA AAAAGGCCAG TTGGAGAGTG
TTCAAAATCA CGCTTACCGA CATGGTGCCG GAGCAAGCTC ATATTCCCCT TTCCATACCT
GACTCTGTGG GTAGCAAAGT CAAAAAGCTT AATACACCGC CATCGGCGCG ACTCATGTCT
AAGCTTAAAA ACCTCAGGTA TTTAGCTCAC GTTACCGATG TGACGTCGGT AACCGGTCAA
GAAACCTATA ACGAGTTTAC CTTCAATCGC GAAAACCTTT CTCATTTGCG AGTCTTTGGG
CACCCTCGAA ACCGAGCGCC CTCTAATATT CATTTAGTAC GTTTTAAATA TGAAGAACAA
CGTATTGAAA GCCGCTATCA GCTAAGAACG CAAATCGAAG CTCGCTTCAA TAATGAGGAT
GCGGTTCACA AAGGCGTAAG TGAAGATATT TCTGTACACG GTTTGGGTCT GCGCGTTGAA
TTAAATAAAG AGTATAAAGG AAGCCTGGAA GGCAGAATTG AAGTGGCTTT TCCCCGGCTG
CAAGAAATTG CTAATGCATT TGATGTTATG CACCTTCAAT ATGAAATTAT CTACCATAAC
GTTGAGAAAA ACATCTTACA CCTGAAGACC ATGCCAGGTG AGGAAGGAAA GAGCGCCCGC
GCCTTCTTTG AAGAGCTAAT CAAAAAGAAT AAAGCTAACT TAAAAGTTGA TAATGACGAA
GAAGAAGTAC CCGGTATCGG CCAGGCACTG CGCTGTATCA ACGCAAGAAA CGCGACCTCT
TTGTCTTTTT TGATGAGCAA AGAAGGGGTT CGCTATACGC CTCAAGCGTG TATCGTTGGC
AAGCAAGACG AGAGGATCAC CACCCTCACC ACGCAATATG CTGAGCAAGG CAAAGTTAAT
CTAGAGTTCC TCTTCAGAGA CAGAAAACAG GATTCGCCTT TCGTTCAAAG CGGCATTAAA
GCCGTAAAGC TTGAAAATAT GCCGCTGCGC CAAGAGCTCT TTATTTCCTT TGATGCATCG
CAAAAAGAAC CGCGTATGGC AATTATCCCT CGTTACTCAG ATAAATTTGA AAGTAATGAG
CAGCGAAGAG CTTTTATTCG AGAAGCGATG GTTCGAGGCC AGTTTATAGC TATTCATGTG
ATGCTGACGA CCACGGGTAA ACCTGATATG AGCATGCTGC AAACTGAAAT CAACTACGTG
ACTATGTATG CCATGCACAG AGCGCGAGAG CTTGAGAAAA AGATGTGGAG TATTGCCGCA
TGTTCACACC TTGTCGATGT GACTGACGAA GTGCTAATTC GTTATGGCTT CACCATGGAA
GACATCACCG CTAATAAAAC GTTAAAAAGC GCTGTAGCGC AGAACGTTGT ATCAAGAATG
ACTTAA
|
|---|
| Protein sequence | MSQDLKQYAD IIEQLKPMVN EPEFNQVLLQ TAADVPKEKR FLIKMEVKRL AKPCMRTIDL
RGHVDGKCKK YVHEGRSHYM DDLAVDKFEE QIRVFGRYTY GVYEAVQNTE NNFRLIREKE
LAQERAHKEN PTAKKRSAVL EQFKVPTVNL LDYRQRNTER MNFAVAVEVF NNAGQAMRGL
SVDISLEGLQ IKLAKDAFFK TGETLFIFFR GLENEFAMDK KNGIAYKLVK IITKNDVNYL
ALQRDKDCPS PAFDKFLESF IHGNKRRYKV NMSNTIEAIT SKTCEQYFSP RSPTLPVYID
VINKTLVPRF AMVNEVNRET VQYWQDEEEN CRLNFLLTQE RLMRLLNKSD EVREIFVFSF
THLHSDKVYF YSASFEELLQ KDILLKVFLG FGSKKASWRV FKITLTDMVP EQAHIPLSIP
DSVGSKVKKL NTPPSARLMS KLKNLRYLAH VTDVTSVTGQ ETYNEFTFNR ENLSHLRVFG
HPRNRAPSNI HLVRFKYEEQ RIESRYQLRT QIEARFNNED AVHKGVSEDI SVHGLGLRVE
LNKEYKGSLE GRIEVAFPRL QEIANAFDVM HLQYEIIYHN VEKNILHLKT MPGEEGKSAR
AFFEELIKKN KANLKVDNDE EEVPGIGQAL RCINARNATS LSFLMSKEGV RYTPQACIVG
KQDERITTLT TQYAEQGKVN LEFLFRDRKQ DSPFVQSGIK AVKLENMPLR QELFISFDAS
QKEPRMAIIP RYSDKFESNE QRRAFIREAM VRGQFIAIHV MLTTTGKPDM SMLQTEINYV
TMYAMHRARE LEKKMWSIAA CSHLVDVTDE VLIRYGFTME DITANKTLKS AVAQNVVSRM
T
|
|---|
| |