| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02834 |
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| Symbol | |
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| ID | 6777754 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 3082458 |
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| End bp | 3083579 |
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| Gene Length | 1122 bp |
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| Protein Length | 373 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 642756281 |
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| Product | sigma-54 depedent transcriptional activator PspF |
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| Protein accession | YP_002127124 |
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| Protein GI | 196157635 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR02974] psp operon transcriptional activator PspF |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAGGT ATCGTCAGCA AGACAATTTG CTAGGTCAAG CGAACAGTTT TCTAGAAGTG
CTAGAGCAAA TTTCACAAAT AGCACCGTTA GATAAACCGG TCCTTGTGAT AGGAGAGCGA
GGTACAGGTA AAGAACTGAT TGCAGCGCGT CTTCACTTCT TATCTAAGCG CTGGGACCAA
AACTATATCA AACTGAATTG CGCAGCCCTA AATGAAAGCC TTTTAGAAAG TGAGCTTTTC
GGTTACGAAG CTGGGGCATT TACCGGTGCG TCGAAACGAC GAGAAGGTCG TTTTGAAGTC
GCCCATAACG GCACACTGTT TCTCGATGAA CTTGCCAATA CTTCGGGTCT AATTCAAGAA
AAGCTCCTTC GCGTTGTCGA ATATGGGGAG TTTGAACGCG TGGGCGGCAG TAAATCGGTG
AAAACCGATG TAAGGCTTAT TGCAGCGACA AATGAAGATC TCCCTGCCCT TGCCGATGCA
GGCGAGTTTC GCGCCGACTT GCTAGATAGG CTAGCCTTCG ATGTGATTAC CATCCCCCCG
CTTCGAGAGC GACGGGAAGA TATCATGATG TTAGCGGAAA ATTTTGCCAT TAATATGGCC
CGTGAGATGG AGATGGAGCT CTTTAGCGGC TTCACTGAAA AAGCCAAGCG TACTCTGCTT
GATTACGATT GGCCCGGAAA TATTCGAGAA CTGAAAAATG TAGTTGAGCG CGCCGTTTAC
CGCACTAACA ACCCTCACCT ACCGGTTCAC GAAATCATTC TTGACCCCTT TGAATCCGTT
TATCGTCCAC AGGGTAGAGT TAAGACTAAG GATAGAGTAA GCACTTCTGA GTCAGCAAGT
CCTATCGTGT CCTCACAACC CGACCATACA AAAGATGTGA TAGAAAGCGC TGACATTACG
CCTTTAACGC CAAGCAATCA GCAAGAATCT GTCGAATATC CCATAGATTT GAAAGAACGC
TCTCAACAAT ATGAGATAGA TATGATAAAA CAGGCACTTG CTGACAGTCA GTTTAATCAA
AAGAAAACCG CTGAAAAATT GAGCCTGACA TATCATCAGC TGCGTGGCTA TCTCAAAAAA
TATAACTTAC TAGATTCTTC CGCTGAAAGC GTCGAGGCGT AA
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| Protein sequence | MSRYRQQDNL LGQANSFLEV LEQISQIAPL DKPVLVIGER GTGKELIAAR LHFLSKRWDQ
NYIKLNCAAL NESLLESELF GYEAGAFTGA SKRREGRFEV AHNGTLFLDE LANTSGLIQE
KLLRVVEYGE FERVGGSKSV KTDVRLIAAT NEDLPALADA GEFRADLLDR LAFDVITIPP
LRERREDIMM LAENFAINMA REMEMELFSG FTEKAKRTLL DYDWPGNIRE LKNVVERAVY
RTNNPHLPVH EIILDPFESV YRPQGRVKTK DRVSTSESAS PIVSSQPDHT KDVIESADIT
PLTPSNQQES VEYPIDLKER SQQYEIDMIK QALADSQFNQ KKTAEKLSLT YHQLRGYLKK
YNLLDSSAES VEA
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