| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02787 |
|---|
| Symbol | prfC |
|---|
| ID | 6775295 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 3036107 |
|---|
| End bp | 3037696 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642756233 |
|---|
| Product | peptide chain release factor 3 |
|---|
| Protein accession | YP_002127077 |
|---|
| Protein GI | 196157588 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG4108] Peptide chain release factor RF-3 |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGATA AGAAACTTCT AGAAGAGATT AAAAAGCGAC GTACGTTCGC AATCATATCG
CACCCGGATG CGGGTAAAAC CACCATTACT GAAAAAGTAT TGTTGTTTGG ACGCGCGCTG
CAGACCGCCG GTACCGTGAA AGGTAAAAAG TCAGGCCAGC ATGCAAAGTC AGACTGGATG
GAAATGGAAA AAGAGCGTGG TATCTCGGTA ACCACCTCGG TTATGCAGTT TCCCTACAGC
GACCATTTGG TGAACCTGCT AGATACCCCG GGGCACGAAG ACTTTTCAGA AGACACTTAT
CGTACGCTAA CGGCCGTTGA CTCGTGTCTA ATGGTTATCG ATGCCGCGAA AGGGGTAGAA
GACAGAACCC GTAAGCTTAT GGAAGTTACC CGTTTGCGCG ATACGCCAAT TGTGACTTTC
ATGAACAAGC TTGACCGCGA TATTCGCGAC CCAATGGAGC TGCTTGATGA AGTAGAAACC
GAGCTTGATA TCTTGTGTGC GCCAATCACT TGGCCTATTG GCTGTGGTAA AAGCTTTAAA
GGGGTTTATC ACCTTCATAG GGACGAAACT ATTCTGTATC AAAGCGGCCA TGGTCACACC
ATTCAAGATG TGCGCATTAT TAAAGGGCTA GACAACCCAG AGCTTGATAC TGCAGTGGGT
AGCGACCTTG CCGAAACCCT GCGCGACGAG CTTGAGTTGG TGCGCGGTGC GTCTAACGAG
TTTGATCAAG AGCTATTCCG TGAAGGTCAG CTAACGCCGG TATTTTTCGG TACAGCATTG
GGCAACTTTG GTGTTGACCA TATGCTTGAC GGGTTAGTTG AGTGGGCGCC AGCACCACTT
GGCCGCGAAA CTGAAGAAGG CACAATTGAA AGCACCGACG GTAAGTTTAG CGGCTTCGTG
TTTAAGATTC AGGCTAACAT GGACCCGAAA CACCGTGACC GCATCGCGTT TTGTCGTATC
GTGTCAGGCA AATACGAAAA GGGCATGAAA ATGCGCAACA GCCGCTTAGG CAAAGACGTG
CGTATTTCTG ATGCATTAAC CTTTTTAGCA GGTGACCGTT CTTTGCTCGA AGAAGCCTAT
GCCGGTGACA TTATTGGTTT ACATAACCAC GGTACTATCC GTATTGGCGA TACTTTTACA
TCAGGCGATA ACTACCGCTT TACCGGTATT CCAAACTTTG CGCCCGAGCT ATTTAAGCGA
ATTCGCTTAA AAGATCCGCT TAAGCAAAAA CAGTTGCTTA AGGGACTTAT TCAGCTATCC
GAAGAAGGCG CGGTTCAAGT GTTCCGCCCC CTTGCGAATA ACGATTTGAT TGTGGGTGCC
GTAGGTGTCC TTCAGTTTGA TGTGGTTGTG GCGCGTTTAA AAGCAGAGTA CAACGTAGAT
GCACTTTACG AGCATGTTAA CGTTGCTACT GCCCGCTGGG TTTACTCTAG TGATGAGAAA
AAACTTGATG AGTTCCGCCG TAAAGGGGAG CAGAACCTAG CTCTAGATGG TGGCGACAAC
CTAACGTATA TCGCACCTAC CATGGTGAAT TTACAGCTAG CGCAAGAGCG CTACCCAGAT
ATTCAATTTA CGAACACGCG CGAAAATTAA
|
|---|
| Protein sequence | MSDKKLLEEI KKRRTFAIIS HPDAGKTTIT EKVLLFGRAL QTAGTVKGKK SGQHAKSDWM
EMEKERGISV TTSVMQFPYS DHLVNLLDTP GHEDFSEDTY RTLTAVDSCL MVIDAAKGVE
DRTRKLMEVT RLRDTPIVTF MNKLDRDIRD PMELLDEVET ELDILCAPIT WPIGCGKSFK
GVYHLHRDET ILYQSGHGHT IQDVRIIKGL DNPELDTAVG SDLAETLRDE LELVRGASNE
FDQELFREGQ LTPVFFGTAL GNFGVDHMLD GLVEWAPAPL GRETEEGTIE STDGKFSGFV
FKIQANMDPK HRDRIAFCRI VSGKYEKGMK MRNSRLGKDV RISDALTFLA GDRSLLEEAY
AGDIIGLHNH GTIRIGDTFT SGDNYRFTGI PNFAPELFKR IRLKDPLKQK QLLKGLIQLS
EEGAVQVFRP LANNDLIVGA VGVLQFDVVV ARLKAEYNVD ALYEHVNVAT ARWVYSSDEK
KLDEFRRKGE QNLALDGGDN LTYIAPTMVN LQLAQERYPD IQFTNTREN
|
|---|
| |