Gene MADE_02709 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_02709 
Symbol 
ID6776502 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand+ 
Start bp2947709 
End bp2948266 
Gene Length558 bp 
Protein Length185 aa 
Translation table11 
GC content44% 
IMG OID642756154 
ProductRNA polymerase sigma factor 
Protein accessionYP_002126999 
Protein GI196157510 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCACGC GAAATAAAAC CGGTAATGGT CAGGTCTTAT CGGGTATGAA AGCAAAACAC 
CAAAGATATG AAGCGCTTGT AAAAGCCTTT CACGCAGATA TTTACCGCTA TGCGTTCTGG 
TTAATCAAAG ACCAAAGCAT TGCCGAGGAT GTTGTGCAAG AAACTTTCTT ACGCGCTTGG 
CGCTCGCTTG ATGCCCTTAA TGATGAAAAG GCGGCAAAGT CATGGCTAAT TACTATTCTT 
CGCCGAGAAA ACGCTCGCCG GTTTGAGCGC AAGCAATTCG ATACCGTTGA TATCGACGAT 
GTGCATATTC AAGACGACAC CCAACATGCT GATGGCGATC TTAAAAATAG GGAGTTACAG 
CGCTTGTTAG GAGGCTTGAG TGTGGAATAT CGCGAACCGT TAATCCTACA GCTAATCTTT 
GGGTTTAGCG GTGAAGAAAT TGCTAATCAA CTTGGGCTTA ACAAAAATAC GGTTATGACT 
CGGCTATTTA GAGCGAGGAA TCAACTCAAA GAGGCGTTAG AGAAACAAAA TGAACAGAGA 
GGTCGTATAA ATGGATGA
 
Protein sequence
MRTRNKTGNG QVLSGMKAKH QRYEALVKAF HADIYRYAFW LIKDQSIAED VVQETFLRAW 
RSLDALNDEK AAKSWLITIL RRENARRFER KQFDTVDIDD VHIQDDTQHA DGDLKNRELQ 
RLLGGLSVEY REPLILQLIF GFSGEEIANQ LGLNKNTVMT RLFRARNQLK EALEKQNEQR 
GRING