| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02533 |
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| Symbol | |
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| ID | 6777046 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | - |
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| Start bp | 2754348 |
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| End bp | 2756069 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 642755972 |
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| Product | putative diguanylate cyclase/phosphodiesterase domain 2 (EAL) |
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| Protein accession | YP_002126823 |
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| Protein GI | 196157334 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCTTAA CAAAATACCA AGAGCCCCCG TTATTTGAAC AGCATGGAGC AGCCGAACGG
CGGTTCCTTC AGCTTATTAG TGCGCTGCCA AAAGTATCGG TGCAAGGTTA CGATAAGCAC
CGCAACGTTA TCTACTGGAA CAAATCAAGT GAAGACATGT ATGGCTATAG CAAGGACGAA
GCCTTAGGTC AAAAGCTTGA GGACCTCATT ATTCCTAACT TCATGAGAGA TGAGGTTGTT
AAATTTCATC AGCGTTGGAT TGAGTTTGAC GAAGCCATTC CCTCTAATGA ATTAGTGCTG
AAAAAAAAGG ACGGGCAACC CATTCATGTT TTTTCGTCTC ATGTAATGTT AAAACAAGGT
TCGGACTCGC CAGAGATGTA CTGTGTTGAT ATTGACTTAA GTGAACAGCA CGAGATACGT
CTAGAGCTCG AGCGTATGGC GTCTACTGAC TTACTGACCG ATTTACCCAA TAGACGCGTG
CTTGAACAGA CGTTAATCTC TATTATCGAA GACGTGACGC ATTCCAACTC AGGCTTTGCG
CTGTTCTTTA TCGACCTTGA TATGTTCAAA GAAATTAACG ATACATTAGG GCATACATGG
GGCGATGAAT TGCTAAAAGC AGTAGCGAAA CGTTTGGTTA GCTGTATTGA TAGCGCAAAT
GGCATGCTAG CTCGATTTGG TGGCGATGAA TTTGTTTATG TTGCGAATAA CATAACCGAC
GAAATTCAGT GTGAAGAAAT CGCAAAAAAG CTTACCGACT GTTTCAAAAA GAGCTTTGAG
CTTAGTACTG AAAGCGTACA CATAACATCG AGTATCGGTA TTAGCATATT TCCAAGGGAT
GGGGATGGCA TTGACGACCT TTTAAAGCAC GCTGATGCGG CTATGTATCA AGCGAAGGCT
GAAGGGCGTA ATAGGTACCA CTTTTTTACC AAGACGTTAA GTCAGAGGTT GCGGCAGCAG
CGAAGTATTG CTGCTCGTCT ACGTGAATCG TTGAAAAAGG ACGAATTTGA GCTTTTATTC
CAGCCCCAAA TAGATGTCAA AACCGGCAAG TTTACATCCT GTGAAGCCTT ACTTAGGTGG
CGCCCTTTGG ATGAAGAAAG CGCTGTACCG CCAAATATCT TCATACCTAT TGCTGAGCGC
AGCGAACTGA TAGCAGACAT AGGGCGTTGG GTATTAGAAA AAACCTGCCA GCAGTCGAAA
AAATGGAAAC AAAAAGGTAT AGGAGTTCGC ATCGATATAA ATGTTTCAGG CAAAGAGTTG
GAAAAAAGTT CCTTCTTTGA GCGTTTAACT GCCTGTCGGT CGCATTATGG GTTATCGCCT
GAAGATATTG GTTTAGAGCT TACTGAAAAC GTTCTGATCA AATCGGATAA TGCAATTTTG
GAAAATTTAC GTGCTCAGCG AGACTTAGGT GTTGAAATAT CGATAGACGA TTTTGGTACT
GGCTACTCTT CACTGAGTTA TTTGAAGCAG TTCCCCGTGA GTCATTTAAA AATCGATCGC
TCGTTCTTAA AAGGCGCGCC TGAAAACGCC TACGACAGCG CCCTGATGGA GGCCATTGTA
AACGTGGGTC ACAAACTCGA TTTGAAGATA GTGGTGGAAG GGGTAGAGAC ACAAAGCCAA
TCTGACTACT GTAAATCGTT GAATGTCGAA TTTGTTCAAG GCTTTTTGTA TTCAAGACCC
ATTAGCGCCG AGGCCATTGA AGCTCTGCTT GAAAAGCAAT AA
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| Protein sequence | MSLTKYQEPP LFEQHGAAER RFLQLISALP KVSVQGYDKH RNVIYWNKSS EDMYGYSKDE
ALGQKLEDLI IPNFMRDEVV KFHQRWIEFD EAIPSNELVL KKKDGQPIHV FSSHVMLKQG
SDSPEMYCVD IDLSEQHEIR LELERMASTD LLTDLPNRRV LEQTLISIIE DVTHSNSGFA
LFFIDLDMFK EINDTLGHTW GDELLKAVAK RLVSCIDSAN GMLARFGGDE FVYVANNITD
EIQCEEIAKK LTDCFKKSFE LSTESVHITS SIGISIFPRD GDGIDDLLKH ADAAMYQAKA
EGRNRYHFFT KTLSQRLRQQ RSIAARLRES LKKDEFELLF QPQIDVKTGK FTSCEALLRW
RPLDEESAVP PNIFIPIAER SELIADIGRW VLEKTCQQSK KWKQKGIGVR IDINVSGKEL
EKSSFFERLT ACRSHYGLSP EDIGLELTEN VLIKSDNAIL ENLRAQRDLG VEISIDDFGT
GYSSLSYLKQ FPVSHLKIDR SFLKGAPENA YDSALMEAIV NVGHKLDLKI VVEGVETQSQ
SDYCKSLNVE FVQGFLYSRP ISAEAIEALL EKQ
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