| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_02352 |
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| Symbol | |
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| ID | 6776822 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | - |
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| Start bp | 2537909 |
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| End bp | 2540569 |
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| Gene Length | 2661 bp |
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| Protein Length | 886 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 642755791 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_002126642 |
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| Protein GI | 196157153 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.346512 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAAAT CACTGGTCAT AGTCGAGTCA CCAGCCAAAG CAAAAACGAT AAATAAATAT
CTTGGTAAAG ATTTTATCGT AAAAAGTTCG GTTGGCCATG TGCGAGATCT TCCAACGAAG
GCGTTAGGCA AAGTAGAGCC TAAAAAACCG GCTAAAGAAC TCAAAACTTT AAGCGAAGAA
GCGCGTCAAG AATACCTTCG ACGTCATGAA TATTTGAAAC TTGTAGACAG AATGGGTGTG
GATCCAGAGA AAGACTGGAA AGCGCACTAC CAAGTATTAC AAGGTAAAGA AAAAGTCGTT
AACGAGCTTA AAAAATTAGC GAAAGACGCT GACACCATTT ATCTCGCAAC CGATTTGGAT
CGCGAGGGAG AGGCCATCGC TTGGCATCTG CAGGAGTTGC TGGGTAAAAA AGATAAAACG
TATCAGCGTG TGGTGTTTAA TGAAATTACC AAAAACGCGA TTCAAGATGC GTTTTCAGAC
CCAGGTGAGC TAAATATATC TCGTGTCAAT GCGCAGCAAG CACGCCGATT CTTAGACCGT
GTTGTGGGCT TTATGGTGTC GCCCCTGCTT TGGAAAAAGA TTGCCCGAGG CCTATCTGCA
GGCCGTGTTC AATCGGTAGC AGTACGCTTA GTGGTGGAGC GCGAGCGAGA AATTAAAGCG
TTTGTGCCTG AAGAGTTTTG GGATGTGCAC GCCGACCTGA CCAGCCAAGA AAAAGCGGCA
CTACGGATGC TGGTGGCTAA GTATCAAGGC AATGGGTTTA AGCCAAAAAA TAAGGCAGAA
GCCGACAAAG CGCTGGCTGA TTTAGAAAGT GCGAAATACA CGGTAGAAAG TCGCGAATCG
AAGCCAACGC AAAGCCGCCC ATCAGCGCCG TTTATCACGT CTACACTTCA GCAAGCGGCA
AGTACGCGAC TAGGCTTTGG TGTTAAGAAA ACCATGATGA TGGCGCAGCG TCTTTATGAA
GCGGGTTACA TCACTTATAT GCGTACCGAC TCGACAAATT TGAGTCAAGA AGCGCTAGAC
AGTGCTCGAG CGTATATTTC CGATAATTTC GGAAACAAGT ATTTACCCGA TTCTCCAATT
CGCTACGGCA GCAAAGAAGG CGCGCAAGAA GCGCACGAGG CGATTCGCCC GTCTAATGTC
AATATCGGCG CTGCTAGTTT AGGTGATATG GAACGTGACG CTCAGCGTCT TTACGAGTTG
ATTTGGCGAC AATTTTTGGC CTGTCAAATG ACGCCAGCGA AGTACGACGC AACCACCATC
AAAGTGGCGG CGGGTGATTA CGAGCTAACC GCCAAAGGCC GTGTACTTAA GTTTGACGGT
TGGACGCGCG TGCAGCCACA GCTTCGCAAA AAAGGCGATG AAGAATTAAT GTTGCCAGAT
GTGCAGAAAG GCGATGTGCT TGACTTGAAA GCACTTGATC CTAAGCAGCA TTTCACAAAA
CCAGTGGCAC GATTTAACGA AGCGTCTTTG GTAAAAGAGC TGGAAAAACG CGGTATTGGC
CGCCCGTCTA CCTACGCGAG TATTATCTCA ACCATTCAAG ACCGCGGCTA TGTACGTTTA
GAGAACAAGC GTTTTTATGC CGAGAAAATG GGTGAGATCG TTAACGATCG TCTAATGGAA
AACTTCGACG ACTTAATGAG CTACGACTTT ACGGCCAACA TGGAGCAACA TCTCGATGAT
ATTGCTGAAG GCAACAAAGA CTGGAAAGAC GTACTCAATG AATTCTACAG TGGGTTTTAC
GGTAAGCTTC TAAACGCAGA GAAAGACCCT GAAGAAGGCG GTATGCGCCT AAATCAGGCG
ATACCAGCGG GTATTGAGTG CGACAAATGC GGCCGTGAAA TGAACGTAAG AACCGCGTCA
ACGGGTGTAT TCTTAGGTTG TTCTGGGTAT AACTTGCCGC CTAAAGAGCG CTGCACGAAT
ACTATGAACT TAACGCCTGG CGATGAAGTC GTTAAGGTAG ATGACGAAGA AGAGCTTGAA
ACCGAAGCCC TCCGTTCTAA AAAGCGTTGC CCTAAATGTG GTACCGCCAT GGACAGTTAC
TTGGTAGATG AAACCCGTAA GCTACACGTT TGTGGAAATA CACCTACCTG TGATGGTACC
TTGGTTGAAG CGGGTACCTT TAAGATTAAA GGCTACGACG GCCCGATTAT CGAATGCGAT
AAGTGCGGCA GCGATATGGA GCTTAAAAAC GGTCGATTCG GTAAATACTT TGGCTGTACC
AACGAAGAGT GTAAGAATAC CCGTAAGCTT TTACGAAACG GCGAAGCTGC ACCACCTAAA
GAAGACCCAG TAGATTTACC TGAGCTACCG TGTGAAAAAT CTGATGCTCA CTTTATGCTA
CGTGACGGTG CGTCGGGCAT CTTCTTAGCG GCCCACAACT TCCCTAAATC GCGTGAAACT
CGTGCACCGA AAGTGGAAGA ACTGGCACGC TTTAGAGATA GAATTTCGCC GAAATTCTAT
TATCTTGCAG ATGCGCCGAA AACCGATCCT GACGGAAATC CTGCAATAGT TCGCTACAGT
AGAAAGACAA AGCAGCAGTA TGTGATGTCG GAAAATGAAA ACGGCAAAGC GACGGGCTGG
TCTGCATGGT ACGACGATGG CAAGTGGCAA GAGCAAGCGG CTAAAAAGCC GGCTGCCAAG
TCGAAAGCTA AGAAAAAATA A
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| Protein sequence | MAKSLVIVES PAKAKTINKY LGKDFIVKSS VGHVRDLPTK ALGKVEPKKP AKELKTLSEE
ARQEYLRRHE YLKLVDRMGV DPEKDWKAHY QVLQGKEKVV NELKKLAKDA DTIYLATDLD
REGEAIAWHL QELLGKKDKT YQRVVFNEIT KNAIQDAFSD PGELNISRVN AQQARRFLDR
VVGFMVSPLL WKKIARGLSA GRVQSVAVRL VVEREREIKA FVPEEFWDVH ADLTSQEKAA
LRMLVAKYQG NGFKPKNKAE ADKALADLES AKYTVESRES KPTQSRPSAP FITSTLQQAA
STRLGFGVKK TMMMAQRLYE AGYITYMRTD STNLSQEALD SARAYISDNF GNKYLPDSPI
RYGSKEGAQE AHEAIRPSNV NIGAASLGDM ERDAQRLYEL IWRQFLACQM TPAKYDATTI
KVAAGDYELT AKGRVLKFDG WTRVQPQLRK KGDEELMLPD VQKGDVLDLK ALDPKQHFTK
PVARFNEASL VKELEKRGIG RPSTYASIIS TIQDRGYVRL ENKRFYAEKM GEIVNDRLME
NFDDLMSYDF TANMEQHLDD IAEGNKDWKD VLNEFYSGFY GKLLNAEKDP EEGGMRLNQA
IPAGIECDKC GREMNVRTAS TGVFLGCSGY NLPPKERCTN TMNLTPGDEV VKVDDEEELE
TEALRSKKRC PKCGTAMDSY LVDETRKLHV CGNTPTCDGT LVEAGTFKIK GYDGPIIECD
KCGSDMELKN GRFGKYFGCT NEECKNTRKL LRNGEAAPPK EDPVDLPELP CEKSDAHFML
RDGASGIFLA AHNFPKSRET RAPKVEELAR FRDRISPKFY YLADAPKTDP DGNPAIVRYS
RKTKQQYVMS ENENGKATGW SAWYDDGKWQ EQAAKKPAAK SKAKKK
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