Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_01438 |
Symbol | |
ID | 6779122 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | + |
Start bp | 1533999 |
End bp | 1534739 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 642754873 |
Product | Transcription negative regulator ChrR |
Protein accession | YP_002125743 |
Protein GI | 196156254 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3806] Anti-sigma factor |
TIGRFAM ID | [TIGR02451] anti-sigma factor, putative, ChrR family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTAGGT TTCACCCAAG TGCCCGACAG CTGTCAGACT TTGTTGAGGG CACATTGTCA CCCGCAATAT CATTGATGGT CTCAGCACAT TGCGATATGT GCGAGAAGTG TCAGCGTTTT GTTGAGGTCG AAACAGAACG TCTTGCTAAG GATCTCGTAT CTGGCGCAGG TGTAGGTGAC AAGTTAGAGG TATCGTTTCA ATTAGATGAG ATGCTCTCTC AGATTACTCA ACTTCCTACA GCACCGCAAA TCGAATCAAA AGCAATCAAA GCTAACAACG CTGTTGCTTC ACCACGCAAT CAAGAAGCGA ACATCAGTCA GCGCAAGGCT ACGAATGCGA TAGAGCTAGA CGGAAGAGTC TTTACGCTAC CCAGAACGTT ACATCGCTAT ATCGATAAGA CGGGAAATTG GTCGAGTCTA GTTGGAAAGC TATGGCAAGC GCCCGTAGAT TTAGGTAACC AAGGCGTTGC GAACTTCATT TTTATGGGGC GGGGCGGAAG CGTACCAGAA CATACCCACC GCGGCACCGA ATACACGCTA GTTATCGACG GAGAATTCAG TGACGGCTTA AATCGCTACG ATACTGGGGA TTTTATTTTC ATGGATGGAG AGAAAACTCA CACGCCAAAG TCTGAAGACA AAGACGGGTG TCTTGTTTTT AGTATCGTCG ACCAGCCACT CCATTTTACG TCTGGTTTGG CGAGATTGTT AAACCCCTTT AGCCACCTGT TTTTCAGATA G
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Protein sequence | MIRFHPSARQ LSDFVEGTLS PAISLMVSAH CDMCEKCQRF VEVETERLAK DLVSGAGVGD KLEVSFQLDE MLSQITQLPT APQIESKAIK ANNAVASPRN QEANISQRKA TNAIELDGRV FTLPRTLHRY IDKTGNWSSL VGKLWQAPVD LGNQGVANFI FMGRGGSVPE HTHRGTEYTL VIDGEFSDGL NRYDTGDFIF MDGEKTHTPK SEDKDGCLVF SIVDQPLHFT SGLARLLNPF SHLFFR
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