| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_01279 |
|---|
| Symbol | |
|---|
| ID | 6777755 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 1372596 |
|---|
| End bp | 1373519 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 642754716 |
|---|
| Product | putative transcriptional regulator with periplasmic binding protein domain (LysR family) |
|---|
| Protein accession | YP_002125587 |
|---|
| Protein GI | 196156098 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0224916 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAAAT CCACACTAGA ACAGTGGCGT ATGTTTAAAG CCGTTGTAGA TGCAGGCGGC
TTTAATCAAG CCGCTGCAGA AGTACATAAA AGTCAATCAA GCGTTCACCA CGCAGTACAA
AAGCTAGAAA ACGCGATTGG GGTTACTTTA TTTGAAAATA TAGGCCGCAA AGTAAAGCTT
TCTCCACAGG GTGAACTTAT GTACCGCCGT GCCTCTTTTC TGCTTAGTGA AGCCCATAAG
TTGGAAGCGG TGGCTGATAG CCTACAGGCC GGAACAGAAA CAACACTACG TATAGCGGTG
GACATAATCT TTCCCTCTGA GCTGTTATAC AACGTTCTCG CTAAAGTCTC TTCTGAATTT
CCCCAGTTGC GCATTGAGAT AGAAGAAACC GTATTAAGTG GCGCTAATTC ACTGTTAAGT
AGTGGAAAAG TAGATTTAGG AATATCCCCT TTCGTGTTGC CCAATGGGTT CAGCGAAGAC
CTTTGTGAAA TTGAGTTTGC CGCTGTTGCT CATGTAGACC ACCCGCTACA TCAGTTAAAC
CGAACACTCA CCCTTGAAGA TTTAAAGGCA CATAGGCAAA TAGTAGTGCG CGACTCCTCC
GCCGAGCGAA AGGCAGATAT TGGGTGGCTA GGCGCCGAAC AGCGCTGGAC AGTAAGCCAT
GTAAGAACAT CACTGGATAT CATTGCCCAA GGATTAGGAT TTGCATGGTT ACCAATTGCT
ATTATTAAAG AAGAGCTAGA AAGCGGTACT TTGCAACCAC TCCCTTTAGA CAATAATGCC
GCGCTAAGAA AAGCATTACT GTATTTGTCG TTTGAAGATG GTGATACCTT AGGCCCCGCA
GCTCGCGCGT TCATCGGAGA GCTCAGGTAT CAAACGATGC ATCTGCCCTC TTCGGACTTT
ATTATGGACG AATGCAAAAA TTAG
|
|---|
| Protein sequence | MLKSTLEQWR MFKAVVDAGG FNQAAAEVHK SQSSVHHAVQ KLENAIGVTL FENIGRKVKL
SPQGELMYRR ASFLLSEAHK LEAVADSLQA GTETTLRIAV DIIFPSELLY NVLAKVSSEF
PQLRIEIEET VLSGANSLLS SGKVDLGISP FVLPNGFSED LCEIEFAAVA HVDHPLHQLN
RTLTLEDLKA HRQIVVRDSS AERKADIGWL GAEQRWTVSH VRTSLDIIAQ GLGFAWLPIA
IIKEELESGT LQPLPLDNNA ALRKALLYLS FEDGDTLGPA ARAFIGELRY QTMHLPSSDF
IMDECKN
|
|---|
| |