| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00494 |
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| Symbol | |
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| ID | 6776112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 524100 |
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| End bp | 526262 |
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| Gene Length | 2163 bp |
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| Protein Length | 720 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 642753926 |
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| Product | sensory box protein |
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| Protein accession | YP_002124806 |
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| Protein GI | 196155317 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGATG ATACGTCCTC CAGCACGCCT TCAAACGATC ACGCCGCATT GCTTGAACGG
CGATTGAAAC GGGAGCGCGC AGCAAGAGAG CAGGCGGAAG CGTTACTCGT AGAGAAAATG
GAAAGCTTGT ACGAAACGCT TAAGCAAAGT CAAAATGCAC AAAAGGATCT TGAGCTAGCG
CTTTGGGCTT CTCAGGAGTC GTTTTGGAGC TGGAAAGCGC AATGCGATAG GATGGAGATA
CGCTCGTTTT CTCTTCATTC TGAGAGTGTA TCAACATGGT CTGGTACGTT AATTCAATTA
TTAGAACGTG TGCATGAAGA CGACATAGAA GGGCTTCAGT TCCACTGGAG TATGGCATTA
CACGGTAAGC GCGATCGTAT AGAGTTCTCT TTTCGCCTAA AGCTAGATGA AGACTTCCAG
TGGGTAAGGT TGCGTGGGCG TGTTTTAGAA CGTGGAAACG CCGGCGAAGC ATTGCACATA
GTTGGTACGA CAAAAGATAT CACGCAACAG CGCAAGGCTG AGCAATCCTT TCATTTGATG
GCATCGGCTT TTGCTAGTTC GCGAGAACCT ATGCTGGTGC TTTCGCCTGA CCTTGTTATT
ACCGAGTGTA ACGATGCTTT CATTCAGTTA ATTGGCGCGA TGGTGAAAGA CCAATGGGTT
GGTCTAGATT TTAACCATAT ATTTATTACC GAAAAAGTCG ATAAAGCGCA GTTAGCTTCG
GATAAGCAAG TGCGTTTCGA GTCTAAAATT AAGACACAAA GCGGAGAAAT CAGAGTCGTT
GATATTTCGG TGGCGCTATT TGAGACCTAT CAGCAAACTT CTTATCTCAT AGCTACTATG
CGCGATATCA GCGATCGCAA ACGCAACGAG GCCAGACTAC GGCAGCTCGC TCTTCACGAT
GAGTTGACTG GGTTATCAAA TCGAAACTTT TTACGGGAAT CTATTACTGG CTTAGTAGAG
AGCAAAAAAC CTTTCGTTTT AGTATTTATC GATTTAGACG GCTTTAAAGC GATTAATGAT
AACGCAGGGC ATGAAAGAGG CGATATCGAG CTACAGCGGG TCGGCGCACA GCTTACCGCC
ATGTTCGGGC CAATCGGTGA AGTCGGAAGG TGGGGGGGCG ATGAGTTTAT AGCGGTACTT
CCTTCGCAAA CATGTGAGAA AATAGCTGAA AAATCTCAGC AGCTTATTCA CCACATCGAA
GAAGACGTGA TTAGCGTTAA ATCTTCAGAG CTAAGGTTAT CGGCCAGTAT CGGCATTGCC
GACTTTCCCG CGCACAGCGA CAGCATAGAA GGCTTGATAC AATGTGCAGA TGCAGCGATG
TATCGCGCAA AAGAGCTAGG GAAAGGGCAA GCTTTCATCT ACGAGCCTGG GCTTTATGAA
AGCATGACTC AGCAAGTGAG TATGGTGAAT GATTTACGCA GAACCGTAGA AAACCATCTA
CTCGATTTTT ATATTCAAGG CAAATACGAC CTAAACGGAG AGTTAAAAGG GGGCGAGGTA
TTGTGCCGTT GGATATCGGG GTTGCACGGC GTGGTTTCGC CAGCTGTATT CATTCCCATA
GCTGAAGAGC AAAAGCTCGA CAGTGCTATT GGTCTACAGG CTTTAGAGGC GGCATGTGAT
TACATTTCTA TTATGGAGTC GCAGCAAGGT GAGTCAATAC CGCTGTCGGT GAATATTAGC
GCCAACCAAA TGCTTGATCC GAACTTTCCG CAGCAGGCGC TAAAGATTTG TATGAACAAC
AGTGTCTCCC CTGAATATAT CGAGTTGGAA TTGACAGAGT CGGTATTTAT TCGGGATGAA
AAAGCGGCGC TTAGGGCGTT AAATACGCTA AAGGAAAATG GCTTTAGGCT CTCCTTAGAC
GACTTTGGTA GTGGTTTTTC ATCGCTTAGC TATTTGCGCA GCTTTCAGTT TGAAGTGGTC
AAAGTGGATA AAAGCTTGAT TCAAGGCATA CACCTAGATA GCAAAGCCAA TGCACTGTTT
AATGGCCTAA TTGCCATGTT AAAAAGCCTG CAAATAGAGG TTGTCGCTGA AGGTGTTGAA
TTAGAGTCTT ACTTACCTTT TATGCAACAA GCGGATATTC AGCTTATGCA GGGCTTTTAC
TTTGATAAAC CTATGCCTTA CGACCAGTTT CTTGCTAGGC ATACATCGGA GCCTAACCGT
TAG
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| Protein sequence | MADDTSSSTP SNDHAALLER RLKRERAARE QAEALLVEKM ESLYETLKQS QNAQKDLELA
LWASQESFWS WKAQCDRMEI RSFSLHSESV STWSGTLIQL LERVHEDDIE GLQFHWSMAL
HGKRDRIEFS FRLKLDEDFQ WVRLRGRVLE RGNAGEALHI VGTTKDITQQ RKAEQSFHLM
ASAFASSREP MLVLSPDLVI TECNDAFIQL IGAMVKDQWV GLDFNHIFIT EKVDKAQLAS
DKQVRFESKI KTQSGEIRVV DISVALFETY QQTSYLIATM RDISDRKRNE ARLRQLALHD
ELTGLSNRNF LRESITGLVE SKKPFVLVFI DLDGFKAIND NAGHERGDIE LQRVGAQLTA
MFGPIGEVGR WGGDEFIAVL PSQTCEKIAE KSQQLIHHIE EDVISVKSSE LRLSASIGIA
DFPAHSDSIE GLIQCADAAM YRAKELGKGQ AFIYEPGLYE SMTQQVSMVN DLRRTVENHL
LDFYIQGKYD LNGELKGGEV LCRWISGLHG VVSPAVFIPI AEEQKLDSAI GLQALEAACD
YISIMESQQG ESIPLSVNIS ANQMLDPNFP QQALKICMNN SVSPEYIELE LTESVFIRDE
KAALRALNTL KENGFRLSLD DFGSGFSSLS YLRSFQFEVV KVDKSLIQGI HLDSKANALF
NGLIAMLKSL QIEVVAEGVE LESYLPFMQQ ADIQLMQGFY FDKPMPYDQF LARHTSEPNR
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