| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00273 |
|---|
| Symbol | |
|---|
| ID | 6776090 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 296172 |
|---|
| End bp | 297503 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 642753701 |
|---|
| Product | pmbA protein |
|---|
| Protein accession | YP_002124585 |
|---|
| Protein GI | 196155096 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0312] Predicted Zn-dependent proteases and their inactivated homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAATTG AGCAGCAGTT AGCCGACATT CAAAATGTCG TAGATGATGT ACTAAAATTA
GCCGTTTCAA AAGGCGCTAC GCAAGCCGAA GCCAGCATGT CAAAAGTGCA AGGCATTGCC
GTATCTTCAC GTATGCAAGA AGTTGAAAAC GTTGAGTTTA CCAACGACGG TGGCCTAGGT
ATTAGCGTAT ATGTAGGCAA GCGAAAAGGC AGTGCTTCTA CTGCTGATCT AAGCAAAGCA
GCGTTAACAT TAGCGGTAGA AAAAGCCGTA GATATTGCAC GTTACACCAG TGAAGATCCT
TGTACTGGTT TGGCCGATGC TGACCTGATT GCTACTGAAT TCCCAGATTT AGACCTGTAT
CACCCCGAAG AATTAGATAC TGAAAAAGCC ATTAAAACTA CCATTGAGGC TGAAAAAGCA
GCAATGGATT ACGACTCTCG CATTACCAAT TCAGATGGCG CGTCGTATAA TGCAAATTTA
GGTATGCGCG TTTATGGCAA TACCCATGGT ATAAACGCAG GTTACCCTAG CAGCCGCTAT
TCTTTAAGCT GTATGGTCAT TGGCGCACAA GATGACGACA TGCAGCGCGA TTATGCCTAC
ACCGTAAGCC GCAAGTCTTC ACTGCTTCAA TCGGCAGCCT CGGTAGGTAT CGATGCCGCA
AAAGCCACGG TAGACCGCTT AGGCGCCCGT AAAATTAACA CAGCAAATGT ACCTGTGCTT
TTACATCGGG ATATCGCATC TAGTTTGTTT GGTCATTATG TAGGTGCCAT TAGTGGGGGT
AGCTTGTACC GTCGTTCAAG CTTCTTACTC GATAGCTTGG GTAAACAGGT ATTTCCCGAA
TGGTTGAATA TTGAAGAGCG CCCGCTTATT AAAGGCGGCT TAGCTAGTTC AAGCTTCGAT
AACGAAGGCG TGGCGTGTGC TGACATGACG ATTGTCGACG CAGGGCAGTT GGCTACATAC
CTTTACACCA CTTATTCGTC GCGCAAACTT AATACCCGCT CCAATGGTCA TGCCGGTGGT
ATTCACAACT GGCTAGTAGG TGATACGGGG CATAGCGACG CTGACCTTCT TAAAGAAATG
GGCACAGGGC TATTTGTGAC CGAGCTTATG GGGCAGGGCG TTAATGGTGT GACCGGTGAC
TACTCACGCG GCGCTGCGGG CTACTGGGTT GAAAATGGTA TCATTCAGTA CCCTGTACAT
GAGGTAACCA TTGCCGGTAA CCTTAAAGAC ATGTTTAAAG GCATTGTCGC GATTGGTGCT
GAAAAGGATG TACGCGGCAG CGTACAGACG GGCTCAGTGC TAATTGACCA AATGAAAATA
GCGGGTAGTT AG
|
|---|
| Protein sequence | MQIEQQLADI QNVVDDVLKL AVSKGATQAE ASMSKVQGIA VSSRMQEVEN VEFTNDGGLG
ISVYVGKRKG SASTADLSKA ALTLAVEKAV DIARYTSEDP CTGLADADLI ATEFPDLDLY
HPEELDTEKA IKTTIEAEKA AMDYDSRITN SDGASYNANL GMRVYGNTHG INAGYPSSRY
SLSCMVIGAQ DDDMQRDYAY TVSRKSSLLQ SAASVGIDAA KATVDRLGAR KINTANVPVL
LHRDIASSLF GHYVGAISGG SLYRRSSFLL DSLGKQVFPE WLNIEERPLI KGGLASSSFD
NEGVACADMT IVDAGQLATY LYTTYSSRKL NTRSNGHAGG IHNWLVGDTG HSDADLLKEM
GTGLFVTELM GQGVNGVTGD YSRGAAGYWV ENGIIQYPVH EVTIAGNLKD MFKGIVAIGA
EKDVRGSVQT GSVLIDQMKI AGS
|
|---|
| |