Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_00252 |
Symbol | |
ID | 6775302 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | + |
Start bp | 271580 |
End bp | 272482 |
Gene Length | 903 bp |
Protein Length | 300 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 642753680 |
Product | putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshM (pilus type IV) |
Protein accession | YP_002124564 |
Protein GI | 196155075 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3267] Type II secretory pathway, component ExeA (predicted ATPase) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTACCAGG GCTTTTTTCA CTTTACCGAG ATGCCGTTTT CGCTTACCCC GAATACGGAC TTCTTCTGCG CGCTAGCGCC GCATAATGAA GCGTTGAAAG TCATTTTGTC GGCGTTGAGT ATGTCTGAAG GCTTTATCAA AGTAACCGGT GAAGTTGGTA CGGGTAAAAC CCTACTGTGC CGTAAGTTAA TCAACCACCT TTCTGACAAA TTTGTGGCTT GCTATTTACC CAACCCTTAC CTATCACCAG ATGAGCTTCG CTTAGCGTTT GCAAAAGAGC TCGGTATTGA TGTCGATACT ACAGGCGATA TTCGGGGCTT GCACAGCGCC ATAGAGGCCA AGCTTTTAAC CCTTAAAAAA GAGGGCCGAC AGGCGGTGCT GATCATTGAT GAAGCACAGT CGCTAAGTTG GGACGCCCTA GAAATGCTTC GGCTGTTTAG TAATCTCGAA ACGGAAAAAA GCAAGCTGCT TCAAATTGTT TTATTTGGTC AACCTGAACT TGACGATAAC TTAAATAACC CAAAAGTGAG GCAAATTCGC CAGCGTATTA GTTTTTCATA TAGGTTACGC ACCATGACTT CTGCTGAGGT TGATTATTAC ATTGGCCATA GGTTGACCAC GGCAGGGGGG AGCGAACACT TAATCTCCAA AGGCTTGCGT GCCTTTGTTG CTTTGGCTAC TAAAGGTACG CCAAGGCTGG TTAATATTGT CTCTCACAAA ATCCTTCTTC GCGCTTATGG TCAGGGTAAA GCTTCAGCGA ACTGGGCGCA TACGGTTAGC GCCGTATTAG ATACCGACGA TTGCAAGCGC CGTCTTGTAC CGAGGCAAAG CATTATTATT TTGTCGCTTG GCGTAGTCGC CGCGCTGGGT ATGCTTCACG TATACGGGGC GGCTAGCCTA TGA
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Protein sequence | MYQGFFHFTE MPFSLTPNTD FFCALAPHNE ALKVILSALS MSEGFIKVTG EVGTGKTLLC RKLINHLSDK FVACYLPNPY LSPDELRLAF AKELGIDVDT TGDIRGLHSA IEAKLLTLKK EGRQAVLIID EAQSLSWDAL EMLRLFSNLE TEKSKLLQIV LFGQPELDDN LNNPKVRQIR QRISFSYRLR TMTSAEVDYY IGHRLTTAGG SEHLISKGLR AFVALATKGT PRLVNIVSHK ILLRAYGQGK ASANWAHTVS AVLDTDDCKR RLVPRQSIII LSLGVVAALG MLHVYGAASL
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