| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_0958 |
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| Symbol | |
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| ID | 5188530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Lactobacillus reuteri DSM 20016 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009513 |
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| Strand | + |
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| Start bp | 1016175 |
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| End bp | 1017950 |
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| Gene Length | 1776 bp |
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| Protein Length | 591 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640590789 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001271557 |
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| Protein GI | 148544187 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00233267 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCTGC ATCCTGATTA CCTCTTAAAT GAAGTTAATG AACCAAGCGA TATTAAGGAC
ATGTCACTTG ACGAATTAAA ACAATTAGCA ACAGAAATGC GTCAACTTGT TCTTGAACGC
GACGCAAAAA TCGGTGGACA CGTGGGCCCT AACCTTGGCG TAATGGAGCT AACGATTGCT
TTTCACTATG TCTTTGATTC GCCCCACGAT AAAGTTATTT GGGATGTTTC ACACCAGAGT
TATGCCCATA AAATGCTGAC AGGCCGGAAA TTAAGTTTTC TCGATCCTGA TCATTATGAA
GATATTACTG GATTTACGTC ACCAGAAGAA AGCGCTCATG ACTTTTTTGA GATCGGTCAT
ACTTCAACGT CAATCTCCCT TGCAGTGGGG ATGGCTCAAG CGCGTGATTT GATGAAGCCG
CAATCACATA ATAACGTTAT GGCAGTAATT GGGGATGGAT CCTTAAGTGG CGGATTAGCT
TTTGAAGGAT TAAACAATGC TGCTAAGCTT AATTCTAACT TGATTATTCT CGTTAATGAT
AATCAAATGT CAATTGATGA GAACCAGGGT GGTTTATACA AAGGGCTAAA AGAACTCCGA
GATACTAACG GTGAATCTCC CAATAATATT TTTAAGTTTA TGGGTCTCGA TTACAAGTAC
GTTGCAGACG GCAATGACTT GCAGACGATG ATCGACACTT TTAAGGAAAT CAAGGATATT
GACCATCCAA TCGTCCTTCA TGTTAACACC TTAAAAGGGA AGGGTTATGA GCCTGCTGTT
GAAGAAAAGA TGAAGTATCA TTGGCGCACT CCATTTGACC TAAAGACTGG TGAAGATAAG
GTTAAAGCAA GTGGAGAATC GTATAGCGAT GCTGTCCTTG CTGAATTAGA TAAGCAAATT
GCAGCGGATA AGCCAGTTGT TGCTATTAAT GCTGGAATTC CTGGTGCGTT TGATCTTGGT
AAATTTAAGG CTAAGCACCC GGATCGTTAT TATGATGTTG GGATTGCTGA ACAGGATTCA
ATTACGACTG CGGTTGCAAT GGCGCAAGCA GGTGCACGCC CTGTTGTGTT TCAAAATAGT
ACTTTCCTTC AACGAGCATA TGATCAATTG ATTCATGATA TGGCATTAAA TGATGCTCCG
GTTGTAATGA TTGTGCGAGG CGGGTCAATT TCAGAAAGTT CTGCTACTCA TCAAGGAACA
TTTGATATTT CAATGATTAG TGATTTGCCA AACATTGAAT ATTTAGCACC AACAAACGTC
GAAGAAATGA TTTCGATGTT ACGGTGGGCA ATTAATCAAA CTGATGAACC AGTAGTAATT
CGTCAACCAG AAAAGCCCCT TCTTCATGGA ACACCAACAC AAGATGACTA CAGTACGATC
AAGTACGATA TTGCTCATCG CGGAAGTGAA GTTGCAATCA TGGCAGTTGG TGACTTCTGG
GAACTTGGTG AAAAGGTAAG AAAGGAACTT CAAGACAAGC TTAATATTGA TGCTACATTG
ATCAATCCAA AGTCGGTAAC TGGAATCGAT TCTGATGTCC TTCACCACCT AGCAGAAAAT
CACGATGTAG TTGTTACACT AGAGGATGGG GTCCTTAGTG GGGGCTTCGG GGAAACAATT
GCTCGTTACT ATGGGCCAAA GGGAATGAAA GTTTTGAACT TTGGAGCACC ACGGGAATTT
GCGGATAATG TTCCTACCGA AGTACTATAT GAATGGTATC ACTTAACCCC TAAACAAATT
GTGGATGATA TTGAGCAGGT TATCCATTCA CTATAA
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| Protein sequence | MNLHPDYLLN EVNEPSDIKD MSLDELKQLA TEMRQLVLER DAKIGGHVGP NLGVMELTIA
FHYVFDSPHD KVIWDVSHQS YAHKMLTGRK LSFLDPDHYE DITGFTSPEE SAHDFFEIGH
TSTSISLAVG MAQARDLMKP QSHNNVMAVI GDGSLSGGLA FEGLNNAAKL NSNLIILVND
NQMSIDENQG GLYKGLKELR DTNGESPNNI FKFMGLDYKY VADGNDLQTM IDTFKEIKDI
DHPIVLHVNT LKGKGYEPAV EEKMKYHWRT PFDLKTGEDK VKASGESYSD AVLAELDKQI
AADKPVVAIN AGIPGAFDLG KFKAKHPDRY YDVGIAEQDS ITTAVAMAQA GARPVVFQNS
TFLQRAYDQL IHDMALNDAP VVMIVRGGSI SESSATHQGT FDISMISDLP NIEYLAPTNV
EEMISMLRWA INQTDEPVVI RQPEKPLLHG TPTQDDYSTI KYDIAHRGSE VAIMAVGDFW
ELGEKVRKEL QDKLNIDATL INPKSVTGID SDVLHHLAEN HDVVVTLEDG VLSGGFGETI
ARYYGPKGMK VLNFGAPREF ADNVPTEVLY EWYHLTPKQI VDDIEQVIHS L
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