| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_2664 |
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| Symbol | |
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| ID | 6878663 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | + |
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| Start bp | 2644679 |
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| End bp | 2647303 |
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| Gene Length | 2625 bp |
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| Protein Length | 874 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 642790521 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_002221065 |
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| Protein GI | 198284744 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGGAT ATTCTTCATG GCACCCCTCC CGCAGGGCGG CAACGCAGGC CACCCTGCGG
AACAGTATCG GGCGCTTGCA GCGGATCACC GATTTCAGCG TGCTTCTTTC CGGCGCCAAT
GAAGTCATCG CCTATACGGA AAACGAAACG GATCTGCTGC GATCCCTCTG CGAATTGGCC
GTCCGGCACA CCCATCTGCG GCTGGCGTGG ATTGGCCGGC CCGATAGTGA TGGCATCTTC
CAAAACCTCG CCGCCGCCGG GGCGGTGCGC TACCTGGAAG GTATCCGCAT ATCCACATCC
GCGGAACTTC CCGAGGGACA AGGCTCCGCA GGCCAGTCCT GGCGCGATCA AAAACCGGTT
TACAATGCCT CGCTCCCCAA AAATGTCCGC ATGAACCTCT GGGCGCAACG CGCCAAAGCC
TTTGGGTTCG GGGCAAGCGC ATCGCTGCCG ATTTATCGGG GCAACACGCT GTGGGCCATC
TTGATGGTCT ATCACGGCAA GAAAAACGTC TTCGATGCCG ACTTCCGGAG AATAATGACG
GATCTGGCCA AAAACGTCAG TTACGGCCTG GATCGTTTGG ACATCCGGCG AAAGGAGCGG
GAATCAAACG CTTTCAACGA AGTGCTGCTG AACGACCAGG CATCCGGCAT CAGCGTCGTG
CGTTTTCCGG AACAGATTGT CGAGCGAGTC AACACGCGGA TGCTGACAAT CCTCGGCGCG
TCTTCCGCGG ATGAGCTGAT CGGACATCCC GTATGGGGGA TCATTCACCA TGAGGAAGTC
GGTGAGCAGG TTGGCCAGTT TGCCCTGGAG GTTCTCAGCG AAGGCTACGC AACACGCAGG
GATGTGCCCT ATCGCCGCCT GGATGGACAA ATGGTTTTCA CGGATATTTC AGGCCAGCGC
CTGGACGGAT CGGATGGTGT GCAACGTATC CTCTGGACTC ATGTGGATGT GACGGAGCGC
CATCGGCTCA TGGATGAACT CACGCAGTTG TCGCTTTCCG ACCCACTCAC CGGCCTGCCC
AATCGCCGCG CTCTGGATAC AGAACTGGGC AAGGCCATGG CCCGCGCTGA TCGTCATGAA
CACCTTTTGA GCGTCGTCAT GATCGATCTC GACGGCTTCA AACCAGTCAA CGACACCTGT
GGCCACGAAG CCGGGGATAT GGTGTTGCGG ACCATCGGCC AGCGTTTACG GAAAGGATTG
CGCGGCACGG ACTTCGTGGC CCGCCTGGGT GGCGATGAGT TCGTTCTGCT CCTGGAGAAC
TGCACCGCCC TGGAGGAGAT CGAAGTGGTC ATGAGGAAGA TCGGGGAAAT GATCCGGCAA
CCCATCGAAC TCCCCGACAA GAGCAGGGCG GAGATCGATC TCAGCGCCGG CATATGCCTC
TATCCTTTCG GCGATTCCCA CAATCCCGAT GCGCTGCTCC GCTATGCCGA TCAAGCACTT
TACGAGAGCA AAAACCACAA GGCGGATCGC GTGCATTACT GGACCCTCTT CGGAGATTCG
GTACCAGTGC GGCAGAACGT CATCCAGACA CGGTTGCGGG AAGGTGGATT GCTGGTCCAT
TACCAGCCCA TACTCGACAA TCGCTCCCAC AAGATCGTGG GTGTGGAGGC TTTGGCGCGG
CTGCGGGACA AGGATGGGCA GATACTCTAT CCGGCGGAGT TTCTGCCTTT GATCACTGTC
GAGGACACCA CCTATCTCAG CAGGATGGTG CTTACCCAGG CGCTGGCGGA TCTGGCCGAG
CTGGATACCT TGGGATGCTC GCTCTGGGTG TCCGTGAACG TAGCCCCGGA GTCCTTCGAT
GACCACTTCG TTCCATGCAT GGCAGGCGTT ATCGGAGCCA GCGATATCGC ACCTTCCCGG
ATCACGCTGG AGATCCTGGA GAGCAGCAAC TTCCTGGAGC ATAACGCCGC GTTGTCCGTT
CTTCACGGCG TCAAAGAACT GGGCGTTCGC CTCGCTCTGG ATGATGTGGG CAGTGCGTAT
TCCTCACTGC TCCGCCTCAA GGACTTGCCC ATTGATGAAA TCAAGCTGGA TCAGGGATTT
ATCCGCTCCC TGGAGGATCG GCCCCAGGAT TTGTATTTTC TTGCTTCCAT TCGGGATTTG
GCCATCGGCC TGGGAGTGGA TCTGGTGGTG GAAGGGGTCG AAACAGATGA CATTGCGGAT
GCAGTCTCGG TCATGGACAT TAAATTACTG CAAGGCTATG GTGTCGCCAG ACCCATGCCC
ATGGCGCAGT TACGGGAATT TCTAGCCCAA CGTCCGTCCT ATCATCGACA GCATCCGACC
AGCTTGTTCG GACTTTATGC CAAACAGATC TGCGACCAGG GAACCTTGAA AAAAATGATC
CTCAGCAATC CGAGCCTGAT CAATAGCGAT GAATTGGCGG ATGCCGCCCG TTGCGACATG
CATCACCATA TGCAGCGCCT GGGTCTCGCT GAAGACTCTC CCTTATTTGG GCTTCATTGG
GAGGTCCATG GTGCCATCGC ATCGTTGTTA AAGGCTCCGG TCGCGGAAGG CTGGGAGCAA
GTTCGGCAGG TGCAAAAGGC ATTTGAGGAT GGCTTGCTGG AAGCTTTCCA GAAAGCAAAG
ACCTGTCGAT CACCAGGCAG TGGTCTATCT TCCGTCCCGG TTTAG
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| Protein sequence | MKGYSSWHPS RRAATQATLR NSIGRLQRIT DFSVLLSGAN EVIAYTENET DLLRSLCELA
VRHTHLRLAW IGRPDSDGIF QNLAAAGAVR YLEGIRISTS AELPEGQGSA GQSWRDQKPV
YNASLPKNVR MNLWAQRAKA FGFGASASLP IYRGNTLWAI LMVYHGKKNV FDADFRRIMT
DLAKNVSYGL DRLDIRRKER ESNAFNEVLL NDQASGISVV RFPEQIVERV NTRMLTILGA
SSADELIGHP VWGIIHHEEV GEQVGQFALE VLSEGYATRR DVPYRRLDGQ MVFTDISGQR
LDGSDGVQRI LWTHVDVTER HRLMDELTQL SLSDPLTGLP NRRALDTELG KAMARADRHE
HLLSVVMIDL DGFKPVNDTC GHEAGDMVLR TIGQRLRKGL RGTDFVARLG GDEFVLLLEN
CTALEEIEVV MRKIGEMIRQ PIELPDKSRA EIDLSAGICL YPFGDSHNPD ALLRYADQAL
YESKNHKADR VHYWTLFGDS VPVRQNVIQT RLREGGLLVH YQPILDNRSH KIVGVEALAR
LRDKDGQILY PAEFLPLITV EDTTYLSRMV LTQALADLAE LDTLGCSLWV SVNVAPESFD
DHFVPCMAGV IGASDIAPSR ITLEILESSN FLEHNAALSV LHGVKELGVR LALDDVGSAY
SSLLRLKDLP IDEIKLDQGF IRSLEDRPQD LYFLASIRDL AIGLGVDLVV EGVETDDIAD
AVSVMDIKLL QGYGVARPMP MAQLREFLAQ RPSYHRQHPT SLFGLYAKQI CDQGTLKKMI
LSNPSLINSD ELADAARCDM HHHMQRLGLA EDSPLFGLHW EVHGAIASLL KAPVAEGWEQ
VRQVQKAFED GLLEAFQKAK TCRSPGSGLS SVPV
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