Gene Lferr_1883 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_1883 
Symbol 
ID6877868 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp1867593 
End bp1868336 
Gene Length744 bp 
Protein Length247 aa 
Translation table11 
GC content55% 
IMG OID642789753 
Producttwo component transcriptional regulator, winged helix family 
Protein accessionYP_002220311 
Protein GI198283990 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0448117 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.830698 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCAACA TACACGAAGG CGATCTGGAT ATCCTGTTGG TGGAGGATGA CCCGAGTATT 
GGCGGGTTTC TGCAGGCGGC GATGGACCGC GAACCAGGAT ATCGCTTGTA CTGGGAAACC
ACGCTGAAAG ATGCCTGGAG GGCTTGGGAG AAACGACAAA TCCAGGAAGG TCGGCCATTC
GCTTTGGTTC TGCTGGACCT TGGTTTACCG GATGGGGATG GGCAGGGATT GATCCGTCGT
CTACGCGACC ACGGAGGGGA ACAGGCATTG ATCATCGTCA TCTCTGCGCG TGGAGGCGAG
GCTGACAAGG TACAGGCCCT CGATAGCGGC GCCGACGATT ATCTGACCAA GCCGTTTACC
ATTGGCGAGC TGCTCGCGCG CCTGCGCGCG CATTTGCGGC GACGACCAGT AGGTTCATCC
GCCGAATCTT CCCATTGGGT CATTGGCGTC TTGGAGCTGG ATGATCTCAC CCATACCCTT
CGCAAGGGCG GGGTGCCTAT TCCGATGACG CCCAAGGAAT ATCAACTGTT CCACCTTTTT
GTGATGAATC AGGGGCGGAT ATTGTCGTAT CGACGAATTC TCGGCGCAGT GTGGGGAGAG
CACAGTAGCG ATCAGGCCCA CTATGTAAGG TTATATATCA AACGACTGCG GGAGAAGATT
GAGGACGATC CCGGAATGCC ACAATATCTG GTAACCGAAA AAGGGGTTGG GTATCGATTT
GGCAATCCGG AGGTGTCAAA ATGA
 
Protein sequence
MTNIHEGDLD ILLVEDDPSI GGFLQAAMDR EPGYRLYWET TLKDAWRAWE KRQIQEGRPF 
ALVLLDLGLP DGDGQGLIRR LRDHGGEQAL IIVISARGGE ADKVQALDSG ADDYLTKPFT
IGELLARLRA HLRRRPVGSS AESSHWVIGV LELDDLTHTL RKGGVPIPMT PKEYQLFHLF
VMNQGRILSY RRILGAVWGE HSSDQAHYVR LYIKRLREKI EDDPGMPQYL VTEKGVGYRF
GNPEVSK