| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1618 |
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| Symbol | |
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| ID | 6877597 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | - |
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| Start bp | 1580881 |
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| End bp | 1582200 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642789484 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_002220047 |
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| Protein GI | 198283726 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.215683 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.000019246 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGTCAC GCAACGGGAT CATCGGTGTC GGCTTGCTCG TCCTTGGCGT AGCCCTTGGG
GCGGGCGCGG TGTGGTGGCT GCGAGTCCCT GCCGCCGCGC CTGGCGTCAA CAACTCCAAT
GCAATCCATT CTCCGAAAAG CACGCTCAAG GGACGGCGTA TCCTCTACTG GGCTGCCCCC
ATGAACCCCA AGATTCATTC GGATCACCCC ATGAAGGACA GTATGGGTAT GCCTTATATA
CCGGTGTACG CCTCTAGTCC GAGCGCGCAA AAAACATCCG GCCTCGGCGT CGATCCGCGC
CTCGCGCAAA ACCTGGGAGT GCGCCTCGTG AATGTCCAGC GCCGTCAGAT GGGCCACGCG
ATCCACACCG TGGGCACCGT GGCAGTGGAC GAGAATCGCG TCTATTCCGT TACTCCACGT
TTCTCCGGTT GGGTGACACA CCTGAATGTC CGCGCCGTAG GCGACCCCGT GCAGCGCGGC
CAGGTACTTG CTGAACTGTA TTCTCCCGAA CTGTATGGTG CGCAACAGGA ATATCTCATT
GCCCGCCGCC GGGGCGGAGC GACGGAAGAC CCGGCATTGC TGGCAGCAGC CAGGGCTAAG
TTAAGACTGT TGGGCATGCC CGAAGACGAA ATCGCCGCAC TCGCCCGGCG CGGCACAGCA
GAGCGGGACG TGCCACTCCT GGCGCCCGCT TCCGGGGTGG TCGAGACCCT CCATGTGCGC
CAGGGTGGTT ATGTCTCACC GCAGAGCAAT GTCTATGAAA TCGCCAATCT CGACCGGGTC
TGGGTCAATG TGGCGCTCTA CTCCTATCAG TTACCCTGGG TGAAAACTGG CAATCCCGTA
CGCCTGCATC TGCCAGCCTA TCCCGGCAGA GTCTGGGCTG GCCGCCTGAA TTTTCTCTAC
CCGACCCTCG ATCCTAAAAG CCGGACGGTG ACGGCCCGGC TGAGCTTTTC CAATCCCGGC
GGGAACCTGC GCCCCGGCAT GTACGCCGAC GCCACCATCG TGGCCAGCCC CGAGGAGGCT
CTGGCCGTAC CCAGCAGTGC CGTATTACAT ACCGCTCAGG GGGATTATGT GATGCTGGGG
GAGCATGATG GACATTTTCT GCCGGTCCAG GTTGCTCTGG GGCCAGAGGT TGACGGCTGG
GTAGCCGTCG ACAAGGGACT CAAAACGGGT GACAGGGTGG TGGAGAGCGC CCAGTTCCTG
CTTTATTCCG AGTCTCAGTT CCAGTCGGTC AAGGCCCGTA TGCTGGGAGG TAACACGGCG
CCTACCAAGA GTGCCATGGC CGGGATGAAC ATGGGTCAGG GAGGGCAGGC TCATGATTAA
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| Protein sequence | MKSRNGIIGV GLLVLGVALG AGAVWWLRVP AAAPGVNNSN AIHSPKSTLK GRRILYWAAP
MNPKIHSDHP MKDSMGMPYI PVYASSPSAQ KTSGLGVDPR LAQNLGVRLV NVQRRQMGHA
IHTVGTVAVD ENRVYSVTPR FSGWVTHLNV RAVGDPVQRG QVLAELYSPE LYGAQQEYLI
ARRRGGATED PALLAAARAK LRLLGMPEDE IAALARRGTA ERDVPLLAPA SGVVETLHVR
QGGYVSPQSN VYEIANLDRV WVNVALYSYQ LPWVKTGNPV RLHLPAYPGR VWAGRLNFLY
PTLDPKSRTV TARLSFSNPG GNLRPGMYAD ATIVASPEEA LAVPSSAVLH TAQGDYVMLG
EHDGHFLPVQ VALGPEVDGW VAVDKGLKTG DRVVESAQFL LYSESQFQSV KARMLGGNTA
PTKSAMAGMN MGQGGQAHD
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