| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1484 |
|---|
| Symbol | |
|---|
| ID | 6877458 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | - |
|---|
| Start bp | 1442415 |
|---|
| End bp | 1443839 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642789354 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_002219921 |
|---|
| Protein GI | 198283600 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.074526 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGGA TACTCGACGA AAGTCCTCTG CTACCCATTC ATTACCGCAT CTGGGCATTA
TCCACCGGCG GCACCCTGCT CAGCGGCGTC TCCATGTTTC TGCTGGGTGT GACGTTACCA
CTCATCATCC CCATTTTTGC CATGCCCGCC ACCAGCATCG GTCTCGCGGC CGCCATGCTC
ATGGGTGGCA CGGTGGTGGG TGCACTGATC GGTGGGCATC TGGCTGATCA CCTGGGGCGC
AAGCCGGTCA TGGTCATGGA TATGATCCTG CTCATGATCG CCGCCCTGCT GACCGCCCTC
GCTCCGGACG CCAGGGTGCT CATCGGTGCC GAATTGCTGG TCGGTGTGGG TATCGGTATG
GATTTCCCAG TGGGCAGCAG TTATCTGGCG GAGTTTATGC CCCAGGGACG GCGCGGACGC
ATGATGGCGG CCTCCATTGC CGTGCAATCC GTGGGCATGC TGGCAGGTGC CGGTTTTGCT
CTGGTTCTTT TGCAAGGCGC TCATTCCGGG GACAACACCT GGCGCTGGTT GCTGGCAGCG
GAAGCGCTGC TGGTGCTCCC TTATCTACTG GGCCGCCTCA CCCTGCCCGA AAGCGCGCGC
TGGTGCATGG GACGCGGTCA TAACGCCGAA GCCGCGCGCA TCCTCGAACG CATCGTACCC
CGACAGAAAG CGATGCTCGA CGCCATGGCC CAGCGTCTGG GCAAAAAAAT CCACCATGTG
GCCAAGATCC GTCCCGGCCG ACATATGGGC ATTCGGACCC TGTTCTCGCC GGAATATCGG
CGCCGCACCC TTCTGGTGAC CTTGCCCTGG TTTTTCATGG ACGTGGCTAC CTATGGTGTC
GGCCTGTTCA CCACCATCCT GCTCGGCACC ATGCGCAATG GCGAAAACGT CGGTATCATC
GGTGTTGTCG GCAGAGACCT TAGCAATGCC TTGGACAGCG GCAAGGTGGA TATCTTCCTC
CTCCTCGGTT CGCTGCTCTC CCTCTGGATG GTGCCCTGGC TGGGACGGAT TCATATGCAG
ATGATCGGAT TTGGCGGTAT GACGCTGGGG ATGGGACTGC TCTATTTTGC GACGGAACTG
GCAGGAAGCA CCGCGGCCCA TCCGCAGCTC ATTCTGAGCG GCTTCATGGT GTTCAATCTG
TTCATGACTG CGGGTCCCAA CGCGACGACC TTCATCCTGC CAACGGAAAT GTACCCCACC
CAGGTGCGCG CCTTCAGCGC CGGGTTCGCC GCCGCCGTAG CCAAGATCGG CGCCACCATC
AGCGTCTTTC TGCTGCCGGT GATCCAGTCT GCGTTGGGCG TTACCGTGAT CCTGCTGCTG
ATGGGCACGG TCAGCCTGTT GGGTCTGGTG CTCACTTACA ACTTCCGGGT GCAGGGCCGC
GGCCTGACGC TGGAAGAACA CCACGGACCG GCTCTGCCCC AATGA
|
|---|
| Protein sequence | MTRILDESPL LPIHYRIWAL STGGTLLSGV SMFLLGVTLP LIIPIFAMPA TSIGLAAAML
MGGTVVGALI GGHLADHLGR KPVMVMDMIL LMIAALLTAL APDARVLIGA ELLVGVGIGM
DFPVGSSYLA EFMPQGRRGR MMAASIAVQS VGMLAGAGFA LVLLQGAHSG DNTWRWLLAA
EALLVLPYLL GRLTLPESAR WCMGRGHNAE AARILERIVP RQKAMLDAMA QRLGKKIHHV
AKIRPGRHMG IRTLFSPEYR RRTLLVTLPW FFMDVATYGV GLFTTILLGT MRNGENVGII
GVVGRDLSNA LDSGKVDIFL LLGSLLSLWM VPWLGRIHMQ MIGFGGMTLG MGLLYFATEL
AGSTAAHPQL ILSGFMVFNL FMTAGPNATT FILPTEMYPT QVRAFSAGFA AAVAKIGATI
SVFLLPVIQS ALGVTVILLL MGTVSLLGLV LTYNFRVQGR GLTLEEHHGP ALPQ
|
|---|
| |