Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_1392 |
Symbol | |
ID | 6877366 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | + |
Start bp | 1348580 |
End bp | 1349248 |
Gene Length | 669 bp |
Protein Length | 222 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 642789265 |
Product | conjugal transfer protein |
Protein accession | YP_002219832 |
Protein GI | 198283511 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3701] Type IV secretory pathway, TrbF components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGAGCA ATCCCGATTA TCTGGCTGCC CGCCAGGAAT GGCTTGAGCG CTACGGCTCC TACATCGCGC AGGCGAGAAA CTGGCGCATC GCTGCCCTGT CGGCTATCGG CATTGCCGCC CTGTTTGGGG CGGGCATGGT GTACGAGGCA GACCGTGTCC ATATCGTGCC CTATGTCGTC GAAGTGGACA AACTGGGCAA GGCTGTGGAA CTGGCGCAGG CCGTGCGGGC CGGTTCTTTC GCCCAGCCGG TAGTGCAGCA CATCGTTTCC CGCTTCACCT GGCTCGCTTT CACGCGCAGC CCGGACAAGC ATGTGCAGAA GCACTTCATC GATGAATCCT ATCATTACAT CGCATCGAGC GCGGAATCCT CGCTGGACGC CTTCTACGCG CAGCACAATC CCTACGCGGC CTATTCCAAC AAGACGCAGG GCAACACGGT CACGATCCAG AGCGCCGTTC CCGTTGGGCA GGTGACGGGC AAGGGTGGCT CGTACATCGT CGATTTCCTG GTAAAGCACT ATGGCCCGCA TGGCGGCGTG GATGGCGAGC AGAACTGGCA AGGCACGGTC ACTTACGCGA CGGTCCCGCC ATCGAACAAC CCCAATGTCC TGAAAGGCAA TCCATTCGGC ATCTACATCA CGCACTTTGC TTTCAGTCCG CAGGTGTAA
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Protein sequence | MSSNPDYLAA RQEWLERYGS YIAQARNWRI AALSAIGIAA LFGAGMVYEA DRVHIVPYVV EVDKLGKAVE LAQAVRAGSF AQPVVQHIVS RFTWLAFTRS PDKHVQKHFI DESYHYIASS AESSLDAFYA QHNPYAAYSN KTQGNTVTIQ SAVPVGQVTG KGGSYIVDFL VKHYGPHGGV DGEQNWQGTV TYATVPPSNN PNVLKGNPFG IYITHFAFSP QV
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