| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1320 |
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| Symbol | |
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| ID | 6877294 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | + |
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| Start bp | 1279646 |
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| End bp | 1281196 |
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| Gene Length | 1551 bp |
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| Protein Length | 516 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642789195 |
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| Product | Type IV secretory pathway VirD2 pilin (relaxase)-like protein |
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| Protein accession | YP_002219762 |
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| Protein GI | 198283441 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3843] Type IV secretory pathway, VirD2 components (relaxase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.010689 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCCA AAACATCACC CAGCCAAACC CGGAAGGGGC GATTTCTCTC CTCTACCGAA
ACGCTGGATG ATCAGCTTTC TCCGGACGGT TCTCCACGTG GACACCATCG CGCAGTCGCA
TCTCGTGTTC ACAACAAGGT GCATCGAGTA AGGGGGAAAC AGGGATCCGG GGCTGTACGC
TCCCTGATCA GGCGTCTGCT TCCCCATGCC GGGAGCAATT TCTACAAGGC CCCGTCGTCC
CGAGGGCCGG CGTTGCAGCA TGCCGGGCGT CGCTGCACGG TAAAGGTGTC CTATGTGCGG
AGCAAGGGGC CGGATCAGTG GCAGGCCCAC GGCAAGTACC TAAGCCGCGA GGGCGCGCAG
CAGGACGGCG AGAAAGGCGA GGGCTTTGAC CGGGATTCCG ATAGCGTCAA TTTGTCGTCG
CTTCTGTCTT CCTGGCAGGA GGAAAACGAT CCACACCTGT TCAAGGTCAT TCTGGCACCC
GAAGATCCAC TGCGGCCAGA GGCCCTGCGG GATATGACGC GCCGATTCAA TGCGCGCATC
CAGCGGCAGA TCGGGCGGGA TTATGAGTGG GCGGCCATCG ACCACCACAA CACCAGCCAC
CCCCATGTTC ACCTGCTGAT TCGTGGCAAG GGCAAGCTCG AACTGGAGCC GGATATGATT
CGCCGGGGGA TGCGCGCCGC CGCCCAGGAG ATTGTCACGG AAAGCCTGGG ATATCGCAGC
GAACGGGAAA TTCAGGCGGC GCGGGAGCGG GAACTGGATC AGCGGCGTTT CACCGCCCTG
GATCGGGGGA TTCTCGACAA GGCGACACCA GCGCCGCAAG GCGGCCGCCT GCAAGGCTAT
TCACTGGTCG ATGAGTCGCC CCCCAACTTA TTGAATGACA AAGATCGCGA AAACCGCCGA
CTCCGGCTCG CCCGACTGGA AAAGCTCGTG GAAATTGGTG TGGCCGACAA GATCGGGCCG
AATCTCTGGC GCCTGGAGCC CGGTTGGGAC AAGGCGCTCA AGGAGCTCCA GATATTGCAG
ACCCGGACGA AAATGCTGGC CGAATCCCGG GCGCTGATGA CGGAGCCTCG CTGCCCGCCA
CAGGTCACGA AGATCCGGGC AGGCGACCGT CTGGTGGGAC GTGTGCTGGG TACGGGGCTG
GATGAGCAAT ATGACCGCAG CTTCGTGCTC ATCGAGGGCG TCGATAACCG GGCGCATATC
GTCTACCAGA CGGGATCGAT AGAGAAAGCC AGAGGAAGGC AGGATCTGGG CCTTCGGCAT
CTCGTCGCCC TCACCGGCTT CGACCATGGC GTTGCCGTCA AGGACTATGG CATCGAGATC
CCGGACCAGG GTTGGAAACG GACGGAGATT CCCGAAGCGG CACTGGATGA CCAACTGGCG
CATGAACGAC GGAATCCGCC CAAGGAAATG ATGGACCCGA CTACCGGCTT TGCGGCAGAA
TGGCATAGAC GGCTCCTGGA GCGGCGCAAG CAAAAAGAGA AAGAACGGGC ACTACAGAAA
AAACAGGCCC GGGAACAGGC AAAGCCGCAG CGGGGATCGG AGATCGAGTA G
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| Protein sequence | MNPKTSPSQT RKGRFLSSTE TLDDQLSPDG SPRGHHRAVA SRVHNKVHRV RGKQGSGAVR
SLIRRLLPHA GSNFYKAPSS RGPALQHAGR RCTVKVSYVR SKGPDQWQAH GKYLSREGAQ
QDGEKGEGFD RDSDSVNLSS LLSSWQEEND PHLFKVILAP EDPLRPEALR DMTRRFNARI
QRQIGRDYEW AAIDHHNTSH PHVHLLIRGK GKLELEPDMI RRGMRAAAQE IVTESLGYRS
EREIQAARER ELDQRRFTAL DRGILDKATP APQGGRLQGY SLVDESPPNL LNDKDRENRR
LRLARLEKLV EIGVADKIGP NLWRLEPGWD KALKELQILQ TRTKMLAESR ALMTEPRCPP
QVTKIRAGDR LVGRVLGTGL DEQYDRSFVL IEGVDNRAHI VYQTGSIEKA RGRQDLGLRH
LVALTGFDHG VAVKDYGIEI PDQGWKRTEI PEAALDDQLA HERRNPPKEM MDPTTGFAAE
WHRRLLERRK QKEKERALQK KQAREQAKPQ RGSEIE
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