| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0338 |
|---|
| Symbol | |
|---|
| ID | 6876289 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | + |
|---|
| Start bp | 319438 |
|---|
| End bp | 320220 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642788211 |
|---|
| Product | protein of unknown function DUF140 |
|---|
| Protein accession | YP_002218799 |
|---|
| Protein GI | 198282478 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0767] ABC-type transport system involved in resistance to organic solvents, permease component |
|---|
| TIGRFAM ID | [TIGR00056] conserved hypothetical integral membrane protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.521263 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTTA TGGAATTCAT ACCCAATCTG GGGCGGCGGA CCCTGCGCAC GGTACCCAAT
CTGGGCACCG CGTCACGCTT TTTGCTGCTG AGCCTGTTTG CGGTAGCGAA CCGTCATTTT
AGCATTCAGC AACTGCTCAA ACAGGTATAC GGCTTTGGGG TGCGGTCGCT GCTGCTGATG
ATGGTCGCCG CATTTTTCAC AGGTATGGTG CTGGGTTTTC AGGGGTATTA TGCGCTGGTG
CGTTTCGGTG CGACCTCCGC GCTGGGCACC CTGGTCGCCC TGTCGCTCCT GCGCGAACTG
GGGCCCGTAC TCACGGCGTT GCTCTTCGCG GGGCGGGCGG GCTCGGCGCT GACCGCCGAA
ATCAGTTCCA TGAAGGCGAC CGAGCAACTG AGTGCCATGG AAATGATGGC GGTCAATCCG
CTCGCCTGGG TCGTGGCACC CCGGCTTTGG GCCGGGATCC TCGTCGTGCC GATCCTCTGC
GTTATTTTTG ACCTGGTCGG CATTTTTGGC GGATACCTCA TTTCGGTGCC GGTGCTGGGT
GTGGACGGTG GCACTTTCTG GGCGCAGATG CAGTCCAACG TAGCGTTTTC CGGAGATATC
CTGACCGGAC TGTTCAAGGC CCTCTGCTTC GGACTGGTGG TGACCTGGAT TGCCGCCTGG
CAGGGTTACG CCGCTCAGCC CACCGCGGAG GGCGTGGGTA ATGCCACAAC CATCAGCGTG
GTGACGGCGT CACTGGCGGT GCTTGGGCTG GATTTCATTC TCACGGCTTT TTTATTCACC
TGA
|
|---|
| Protein sequence | MAFMEFIPNL GRRTLRTVPN LGTASRFLLL SLFAVANRHF SIQQLLKQVY GFGVRSLLLM
MVAAFFTGMV LGFQGYYALV RFGATSALGT LVALSLLREL GPVLTALLFA GRAGSALTAE
ISSMKATEQL SAMEMMAVNP LAWVVAPRLW AGILVVPILC VIFDLVGIFG GYLISVPVLG
VDGGTFWAQM QSNVAFSGDI LTGLFKALCF GLVVTWIAAW QGYAAQPTAE GVGNATTISV
VTASLAVLGL DFILTAFLFT
|
|---|
| |