| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0242 |
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| Symbol | |
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| ID | 6876192 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | + |
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| Start bp | 229752 |
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| End bp | 231332 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642788118 |
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| Product | Type IV secretory pathway VirD2 pilin (relaxase)-like protein |
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| Protein accession | YP_002218707 |
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| Protein GI | 198282386 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3843] Type IV secretory pathway, VirD2 components (relaxase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.703018 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCCGA GAACACCCCT GGGCCAAACC CGCTCCGGAC GTTTTCTGTC GTCCACCGAA
ACGCTGGATG ATCAGCTTTC TCCCGACCGA TCCCCGCGGG GGCACAACCG CCCGGTCGCA
TCCCGTGTTC ACAACAAGGT GCATCGAGTA CGGGGGAAAC AGGGATATGG GGCTGCACGC
GCCCTGATCA AGCGTCTGCT TCCCCATGCC GGGAGCAATT TCTACAAGGC CCCGTCGTCC
CGAGGGCCGG CGTTGCAGCA TGCCGGGCGT CGCTGCACGG TAAAGGTGTC CTATGTGCGG
AGCAAGGGGC CGGATCAGTG GCAAGCCCAC GGCAAGTACC TGAGCCGCGA GGGCGCGCAG
CAGGACGGCG AGAAAGGCCA GGGCTTTGAC CGGGATTCCG ATAGCGTCAA CCTGTCGTCG
CGTTTGTCTT CCTGGCAGGA AGAAAACGAT CCACACCTGT TCAAGGTCAT TCTGGCTCCC
GAAGATCCAC TGCGGCCAGA GGCCCTGCGG GAAATGACGC GCCGATTCAA TGCGCGCATC
CAGCGGCAGA TCGGGCGGGA TTATGAGTGG GCGGCCATCG ACCACCACAA CACCAGCCAC
CCCCATGTTC ATCTGCTGAT TCGTGGCAAG GGCAAGCTCG AACTGGAGCC GGATCTGATT
CGCCGGGGAA TGCGCGCCGC AGCCCAGGAG ATTCTCACGG AAAGCCTGGG ATATCGCAGC
GAACGGGAAA TTCAGGCAGC GCGGGAGCGG GAACTGGATC AGCGGCGTTT CACCGCCCTG
GATCGGGGGA TTCTCGATAA GGCGACATCC GCGCCGCAAG GCGGCCGCCT GCAAGGCTAT
TCACTGGTCG ATGAGTCGCC CCCCAACTTA TTGAATGACA AAGAGCGCGA AAACCGCCGA
CTCCGGCTCG CCCGACTGGA AAAGCTCGTG GAAATTGGTG TGGCCGACAA GATCGGGCCG
AATCTCTGGC GACTGGAGCC CGGTTGGGAC AAGGCCCTCA AGGAGCTCCA GATATTGCAG
ACCCGGACGA AGATGCTGGC TGAGGCGCGG GCCTTGATGA CGGAGCCCCG CTGCCCGCCA
CAGGTTACGA AGATCCGGGC AGGCGACCGT CTGGTGGGAC GTGTGCTGGG TACGGGACTG
GATGAGCAGT ATGACCGCAG TTTCGTACTC ATCGAGGGCG TCGATAACCG GGCGCACATC
GTCTACCAGA CGGGGTCGAT AGAGAAAGCC CGTGGACGGC AGGATCTGGG GCTTCGTCAT
CTCGTCGCCC TCACCGGCCT CGACCGCAGC GTTGCCGTCA AGGACTACGG CATCGAGATC
CCGGACCAGG GCTGGAAACG GACAGAGATT CCCGAAGCCG CACTGGATGA TCAACTGGCG
CATGAACGAC GGAATCCGCC CAAGGAAATG CTGGACCCTG CTACCGGCTT CGCGGCGGAA
TGGCATCGCC GGCTGCTGGA TCGGCGCAAG GAGAAGAAGC GGGAGCGATT GGCGAAAGAC
AAGGACCGGA AGATCCGGGA GACTGCCGAT GCCCAGAAGA AAAAGGCAGC CAGGAAGAAC
CCGGGCACCC AAATCGAATA G
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| Protein sequence | MKPRTPLGQT RSGRFLSSTE TLDDQLSPDR SPRGHNRPVA SRVHNKVHRV RGKQGYGAAR
ALIKRLLPHA GSNFYKAPSS RGPALQHAGR RCTVKVSYVR SKGPDQWQAH GKYLSREGAQ
QDGEKGQGFD RDSDSVNLSS RLSSWQEEND PHLFKVILAP EDPLRPEALR EMTRRFNARI
QRQIGRDYEW AAIDHHNTSH PHVHLLIRGK GKLELEPDLI RRGMRAAAQE ILTESLGYRS
EREIQAARER ELDQRRFTAL DRGILDKATS APQGGRLQGY SLVDESPPNL LNDKERENRR
LRLARLEKLV EIGVADKIGP NLWRLEPGWD KALKELQILQ TRTKMLAEAR ALMTEPRCPP
QVTKIRAGDR LVGRVLGTGL DEQYDRSFVL IEGVDNRAHI VYQTGSIEKA RGRQDLGLRH
LVALTGLDRS VAVKDYGIEI PDQGWKRTEI PEAALDDQLA HERRNPPKEM LDPATGFAAE
WHRRLLDRRK EKKRERLAKD KDRKIRETAD AQKKKAARKN PGTQIE
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