| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4363 |
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| Symbol | |
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| ID | 6161135 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4881296 |
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| End bp | 4882582 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 641667140 |
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| Product | RNA polymerase ECF-subfamily sigma factor |
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| Protein accession | YP_001793379 |
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| Protein GI | 171061030 |
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| COG category | [K] Transcription |
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| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCTG AGCCGGCCGA GGTGCACCGC GCCATCGAGG CGGTCTGGCG CATCGAGGCG
GCCCGCATCA TCGCCGGCGT GGCGCGCCTG ACGCGCGACA TCGGCCGCGC CGAGGAGCTG
GCGCAGGACG CGCTGGTGGC CGCGCTCGAA CACTGGCCGG TCGACGGCCT GCCCGACAAG
CCCGGCGCCT GGCTGATGGC CACCGCGAAG AACCGCGCGC TCGACCACCT GCGCGCGCTG
GCCCTGCACG CGCGCAAGCA CGAAGAACTC GGCCTCGACC TCGAGGCGCA GGAGGCCCAT
GTGGTGCCCG ATTTCGTCGA TGGGCTGGAC GCGCGGCGCG CCGACGACAT CGGCGACGAC
CTGCTGCGCC TGATCTTCAC CACCTGCCAC CCGGTGCTCG CCGCCGACGC TCGCGTGGCG
CTGGCGCTGC GCCTGCTGGG CGGCCTGGGC ACCGACGAGA TCGCGCGTGC CTGCCTGGTG
CCCGAGCCGA CCATCGCGCA GCGCATCGTG CGTGCCAAGC GCACGCTGGC GAAGGCGCAG
GTGCCGTTCG AGCTGCCCGC GCCGGCGCAG CGCGCCGAGC GGCTGGGCTC GGTGCTGGAG
GTGATCTACC TGATCTTCAA CGAGGGTTAC GCCGCCACCG CCGGTGATGA CTGGATGCGC
CCGGCGCTGT GCGACGAGGC GCTGCGCCTG GCGCGCGTGC TGGCCGGCCT GATGCCGCAG
GAGAGCGAGG TGCACGGCCT GGCCGCGCTG CTGGAGATCC AGGCCTCGCG CGCCCATGCC
CGCATCGATG CGCAAGGCCG GCCGGTGCTG CTGCTCGAAC AGGACCGCAG CCGCTGGGAC
CGGCTGCTGA TGCGCCGCGG CCTGGCGGCC CTCGACCGGG CCGAGGCCAC GTGCGCCGAC
GGCGCGCTCG GCCCCTACGC GCTGCAGGCG GCCATCGCTG CCTGCCACGC CCGCGCGGCG
CGCGCCGAAG ACACCGACTG GCCGCGCATC GTCTCGGTCT ACGACCAACT GCTGCAGCGC
CAGCCCTCGC CGGTGGTGGC GCTCAACCGC GCGGTGGCGG TCGGCATGGC GCTGGGGCCG
GCCGAGGCGC TCGAACTCGT CGATCCGCTG ACCGACGAGC CGGCGCTGGC GCGTTACCCG
TGGCTGCCCG CGGTGCGCGG CGATCTGCTG GCCCGGCTGG GCCGCGATGC CGAGGCGGCG
GCGGCCTTCG AGCAGGCCGC GGCGCTGACA CGCAACGGGC GCGACCGCGA GCTGATGCGC
GCCCGCGCCG AAGCGCTCAG GGCCTGA
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| Protein sequence | MKPEPAEVHR AIEAVWRIEA ARIIAGVARL TRDIGRAEEL AQDALVAALE HWPVDGLPDK
PGAWLMATAK NRALDHLRAL ALHARKHEEL GLDLEAQEAH VVPDFVDGLD ARRADDIGDD
LLRLIFTTCH PVLAADARVA LALRLLGGLG TDEIARACLV PEPTIAQRIV RAKRTLAKAQ
VPFELPAPAQ RAERLGSVLE VIYLIFNEGY AATAGDDWMR PALCDEALRL ARVLAGLMPQ
ESEVHGLAAL LEIQASRAHA RIDAQGRPVL LLEQDRSRWD RLLMRRGLAA LDRAEATCAD
GALGPYALQA AIAACHARAA RAEDTDWPRI VSVYDQLLQR QPSPVVALNR AVAVGMALGP
AEALELVDPL TDEPALARYP WLPAVRGDLL ARLGRDAEAA AAFEQAAALT RNGRDRELMR
ARAEALRA
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