| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4309 |
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| Symbol | |
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| ID | 6163086 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4820933 |
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| End bp | 4821865 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641667086 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001793325 |
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| Protein GI | 171060976 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCCGCC CCAAGCCGGC CTGGCGACCG CCCACGCGCG ACGGCGTCGG CCCGAGCTGC
GTCGCCACGC TGCCCGGCGC GTGGCCCGGC GCGGCGGACT TCCTGGCCGA GCGCCTGCCG
GTGCTGACCG CCGATCAATG GCGCGAGCGC ATGGCCGCAG GCGACGTGCT GGCCGTCGAC
GGTCGGCCGC TGCCGCCCGA CGCGCCGCAT GTGGCGCACA CCCGGCTCTG GTACTGGCGC
GCGCTGCCGG CCGAACCGCG CATCCCGTTC GAGGCGGAGG TGCTGTTCCA GGACGCGCAT
CTGGTGGCGG TCGACAAGCC GCATTTCCTG CCGATGACGC CCAAGGGCCG CTACGTGCAG
GAGACGCTGC TGGTGCGCCT GAAGCGCCAG CTCGGCATCG ACACGCTGGT GCCGATGCAC
CGGCTCGACC GCGAGACCGC CGGCGTGGTG CTGTTCACCG TGCAGCCGGC GACCCGCCAC
GCCTATCAGT CGCTGCTGCG CGATCGTTCG GTCGAGAAGG TCTACGAGGC GGTCGCACCG
TGGCGCGCCG ATCTGGCGCT GCCGCTGACG CGCTGCAGCC GGCTGCAGGA GCGCGCCGAC
GCCTTCATGC AGATGGCCGA GGTGGCCGGC GAGCCGAATG CGCAGACGTC GATCGAGCTG
ATCCGGCGGG TGGCTGCGGC CGAGCCGCTG GCGCTGTACC GCCTGCGCCC GCGGACCGGG
CAGAAACACC AGCTGCGCGC CCACATGGCG GCGCTGGGCT TGCCGATCCG CGGCGACCGG
ATCTACCCGG TGTTGCAGCC GGATCTGGCC GAGGGCGCCC AGCCCGACTA CAGCCGGCCG
CTGCAGCTGC TGGCGCGCTC GATCGCGTTC ACCGATCCGG TCAGCGGCGC GCCTCGCCGT
TTCGAGAGCC GGCGGGTGCT GACGGTCGAT TGA
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| Protein sequence | MSRPKPAWRP PTRDGVGPSC VATLPGAWPG AADFLAERLP VLTADQWRER MAAGDVLAVD
GRPLPPDAPH VAHTRLWYWR ALPAEPRIPF EAEVLFQDAH LVAVDKPHFL PMTPKGRYVQ
ETLLVRLKRQ LGIDTLVPMH RLDRETAGVV LFTVQPATRH AYQSLLRDRS VEKVYEAVAP
WRADLALPLT RCSRLQERAD AFMQMAEVAG EPNAQTSIEL IRRVAAAEPL ALYRLRPRTG
QKHQLRAHMA ALGLPIRGDR IYPVLQPDLA EGAQPDYSRP LQLLARSIAF TDPVSGAPRR
FESRRVLTVD
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