Gene Lcho_4103 details

Gene Information

• Locus tag: Lcho_4103
• ID: 6160061
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 4607402
• End bp: 4609459
• Gene Length: 2058 bp
• Protein Length: 685 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 641666881
• Product: patatin
• Protein accession: YP_001793120
• Protein GI: 171060771

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 9
• Fosmid unclonability p-value: 0.0000000427908
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGAGCGCCG ACGACCGCGA GCCGCCGGAA GACCGCTTCT GCGACCTGGT GCTGACCGGC 
GGGGTGACCA GCGGCGTGAT CTACCCGGCG GCGATCCACG CGCTGTCGCG CAAGTACCGT 
TTCCACGCCA TCGGCGGCAC CTCGGCCGGC GCGATGGCCG CGGCGCTGAC CGCGGCGGCC 
GAATACGCGC GCCGCTTCGG CTCGTCAGCC GGCTTCGAGG TGCTCAAGGA GATCCCCGAG 
CGGCTGGCCC GCCCGGTCGG CCAGGGCCGC GACGCGAAGA CCAAGCTGCT CGCGCTGTTC 
CAGCCCTCGC CGCGGTGCGC GCGGCTGTTC GAGGTGCTGC TGGACGTGAT CGGCACCGAC 
CTGCAGCGGA CCTTCGACGG CCTGTTCAAG CGCAGCGTGA AGGCCATCGC CCGGGTCTAC 
GGGAATGGGC CGGCGGCCAT CGTCACGGGC GTCTTCCTTT CGAGCCTGGT GGCGATCGCG 
TCGGGCCTGG ACACGACCGT CGAGCGCGCC AGCGTGGCGG TGCTCGCGTT CGTCATCGGC 
ATCGGCGTGG TCATCGCGGT CATAACGGCC CGACTCCTGC GCGACGTGCG CGACGGCCTG 
ATCGCCAACG ACTACGGCCT GTGCACCGGC CTGTCGGCAT CGGACACGCC GGACGAGGAC 
TCGGAGGCGG TGATCGACTG GCTGCACAAG GGCATCCAGT GGGCCTGCGG TCGCAGCACC 
GACGACACGC CGCTGACGTT CAAGGACCTG TGGGAAGCCC CGGCCACCGG CCTGCCGCCG 
CCCAAGCCGC GCCAGGCCGG ACGCCGCGCG ATCGACCTGC GCATGGTCAC GACCAGCCTC 
ACGCACGGCC GCCCCTACGA GCTGCCGCTG GCCGACACGG CCGAGAACGA ATGCCTGTTC 
TTCTGCCTCG ACGACTGGCG GCGCTACTTT CCGCCGCGCG TGATCGAGCA GCTGCGCGCC 
ACCTGCACGC CTTACGGCGC GCTGGCCGGG CGCTTCGACC ACGCGCCCGA ACCCGAGGGC 
AAGGTGCTGC TGCAGATGCC GCGCGCCCGC ATGCCGCTGG TGGTGGCGGC ACGGCTGAGC 
CTGAGCTTTC CGGTGCTGTT CTGCGCGGTG CCGGCGTGGG GGTTCGATCC GGCGCTCAGG 
CAGTTCCGGC CTTGCTGGTT CTCGGACGGC GGCATCTGCG CCAACTTCCC GATCCACCTG 
TTCGACGCGT CGATCCCGAG CTGGCCGACC TTCGGCGTCT TCCTGACCGA GAACCGCAAC 
GGCGATGACG AAAGCAATGT CGAGGTCACG CACACCCACG ACGCGGGCGC CCACGATGTC 
TGGAGCGATT TCGGCGATCC GAACGAGCCG CCGTCGCTGG CCCGGCTGGG CCGCTTCGCC 
TGGAGCATCG TCAACACCGC GCGCCGCTGG CACGACCACA CGCTGGCGCG CATGCCAGGC 
GTGCGCGACC GCGTGGTGCG GGTGGCGCTG GGTCGCGACC AGGGCGAGCT GAACCTGAAG 
ATGAAGCCGG ACGACATCCT CCGGATGGTC GACGAATGCG GCCTGAAAGC TGCGCAGGAA 
CTGATCGCCA AGTTCGCCCC GGACGACACG CAGGGCTCGG TCGCCACGGC CTGGTCGGAG 
CACCGCTGGG TGCGCTTCAA CGCCATCGTC GACGGACTGC GCGAGCGGCT CGACGGCCTG 
GCCGATGCGG CCGAGGCGGC GCCCTACTCG CTCAAGATCT CGCAGCAGAT CGAGCGTGCC 
GGCCAGCACA GCCCGCTGCG CCGCGGCCAC GCCGATCGCC TGCCGCGCGG CCCCTGGCAG 
AGCGCGCCGC CACCGATGTT CGAGGCCGAA GACGAGACCG GCAGCGGATC GGGCGACGCC 
GCCGCCCGCA GGGCCGCGCC GCTGGGCCAG CACCGCCGCG ACACCGGCGA GGACCGGCTC 
GACGACGACC AGCGCCAGGC GCTGGCGGCG CTGCTGGATG CGCTGGTCGA GTTCGAGCAG 
AAGCTGCAGC AGAGCTGGCA CGAGCAGCCC TACGTGCCGA ACCCGCGGCC GCGGCTGGCG 
GTGCGACCGC CGATGTGA 

 

Protein sequence

MSADDREPPE DRFCDLVLTG GVTSGVIYPA AIHALSRKYR FHAIGGTSAG AMAAALTAAA 
EYARRFGSSA GFEVLKEIPE RLARPVGQGR DAKTKLLALF QPSPRCARLF EVLLDVIGTD 
LQRTFDGLFK RSVKAIARVY GNGPAAIVTG VFLSSLVAIA SGLDTTVERA SVAVLAFVIG 
IGVVIAVITA RLLRDVRDGL IANDYGLCTG LSASDTPDED SEAVIDWLHK GIQWACGRST 
DDTPLTFKDL WEAPATGLPP PKPRQAGRRA IDLRMVTTSL THGRPYELPL ADTAENECLF 
FCLDDWRRYF PPRVIEQLRA TCTPYGALAG RFDHAPEPEG KVLLQMPRAR MPLVVAARLS 
LSFPVLFCAV PAWGFDPALR QFRPCWFSDG GICANFPIHL FDASIPSWPT FGVFLTENRN 
GDDESNVEVT HTHDAGAHDV WSDFGDPNEP PSLARLGRFA WSIVNTARRW HDHTLARMPG 
VRDRVVRVAL GRDQGELNLK MKPDDILRMV DECGLKAAQE LIAKFAPDDT QGSVATAWSE 
HRWVRFNAIV DGLRERLDGL ADAAEAAPYS LKISQQIERA GQHSPLRRGH ADRLPRGPWQ 
SAPPPMFEAE DETGSGSGDA AARRAAPLGQ HRRDTGEDRL DDDQRQALAA LLDALVEFEQ 
KLQQSWHEQP YVPNPRPRLA VRPPM