| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4032 |
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| Symbol | |
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| ID | 6164082 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4516404 |
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| End bp | 4518194 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641666812 |
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| Product | acyl-CoA dehydrogenase domain-containing protein |
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| Protein accession | YP_001793051 |
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| Protein GI | 171060702 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1960] Acyl-CoA dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.000000200788 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCCCAGT ACACCCCGCC GTTGCGCGAC ATGCAGTTCG TGCTGCACGA GCTGATCGAC
GTCACCACCG CCTTCAAGGC CATGCCGGCG CACGCCGAGG TCGACGTCGA CACCGTCAAC
GCGGTGCTGG AGGAGGGCGG CAAGTTCGCC GCCGGCGTGG TGTTCCCGCT CAACCAGAGC
GGCGATGCCG AAGGCTGCAC GCGCGACCCG GCGACCCACG CCGTGCGTGC GCCGGCGGGC
TACAAGCAGG CCTATGCGCA ATATGTCGAA GGCGGCTGGG CCTCGCTGAG CTGCGATCCG
GCCTACGGCG GCCAGGGCCT GCCGCAGGTC GTGAACCAGT GTTTCTACGA GATGCTCAAC
AGCGCCAACC AGGCCTGGAC GATGTATCCC GGCCTGTCGC ACGGCGCCTA CGAGGCGCTG
CACGCCCACG GCACCCCCGA GCAGCAGGCC ACCTACCTGC CGCGCCTGAC CAGCGGCGAA
TGGACCGGCA GCATGTGCCT GACCGAGCCG CACTGCGGCA CCGACCTCGG CCTGCTGCGC
ACCAAGGCGG AGCCGCTGGC TGACGGCAGC TACGCGATCA CCGGCAACAA GATCTTCATC
TCGGCCGGCG AACACGACCT GGCCGCCAAC ATCGTGCACC TGGTGCTGGC CCGCCTGCCC
GGCGCGCCCG AAGGCAGCAA GGGCATCTCG CTGTTCGTGG TGCCCAAGTT CAACGTCAAC
GCCGACGGCA GCCTGGGCGC GCGCAACGGC ATCTGGTGCG GCGGCCTCGA ACACAAGATG
GGCATCCACG GCAACGCCAC CGCGCAACTG GTGCTCGACG GCGCCGTGGG CACCCTGGTC
GGCGAGCCTC ACAAGGGCCT GGCGGCGATG TTCGTGATGA TGAACGCGGC CCGCCTGGGC
GTGGGCATGC AGAGCCTGGG CCTCACCGAG GTGGCCTACC AGAACGCCGT CGCCTACGCG
AAGGACCGCA TCCAGATGCG CGCGCTGACC GGGCCGAAGG CGCTCGACAA GCCGGCCGAT
CCGATCATCG TGCACCCCGA CGTGCGCAAG ATGCTGCTGA CCGCGCGCGC CTACGCCGAA
GGCGGCCGCG CCCTGTGCGT GCACACCGCG CTGATGCTCG ACCAGGAGCT GAGCCACCCC
GACGAGGCCG TGCGCCGCGC CAGCGCCGAC GAGGTGGCGC TGTTGACGCC GATCGTCAAG
GCCTTCCTGA CCGACAACGG CTGGATCGCC ACCTCGCACT GCCTGCAGGT GTTCGGCGGC
CACGGCTACA TCCGCGAATG GGGCATGGAG CAGTACGTGC GCGACGCCCG CATCAACATG
ATCTACGAGG GCACCAACAC CATCCAGTCG CTCGACCTGC TGGGCCGCAA GGTGCTGGCC
GACAACGGTC GCAAGCTCAA GGCTTTCGGC CGGCGCGTGG CCGATCTGAT CGACGAGGAA
GGCGTGCGCG AGGACATGCA GGAGTTCATC AACCCGCTCG CTGATCTCGG CGACAAGGTC
AACAAGCTGA CCACCGAACT CGGTTTCAAG GCGATGGGCA ACGCCGACGA GGTGGGCGGC
GCGGCGGTCG ATTACCTGCG CGTGGTCGGC CACCTGGTGT TCGCCTATTT CTGGGCCCGC
ATGGCCCGGA TTGCGCTCGA TCAACAGGGC AGCGGCGATC CGTTCTACAC CGCCAAGCTG
CACACCGCGC GTTTCTACTT CGCCAAGCTG CTGCCCGAGA CCGCCAGCCT GATCCGCACC
GCCCGCGCCG GCGTCGCGCC GCTGATGGCG ATGGACGAGT CGATGTTCTG A
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| Protein sequence | MPQYTPPLRD MQFVLHELID VTTAFKAMPA HAEVDVDTVN AVLEEGGKFA AGVVFPLNQS
GDAEGCTRDP ATHAVRAPAG YKQAYAQYVE GGWASLSCDP AYGGQGLPQV VNQCFYEMLN
SANQAWTMYP GLSHGAYEAL HAHGTPEQQA TYLPRLTSGE WTGSMCLTEP HCGTDLGLLR
TKAEPLADGS YAITGNKIFI SAGEHDLAAN IVHLVLARLP GAPEGSKGIS LFVVPKFNVN
ADGSLGARNG IWCGGLEHKM GIHGNATAQL VLDGAVGTLV GEPHKGLAAM FVMMNAARLG
VGMQSLGLTE VAYQNAVAYA KDRIQMRALT GPKALDKPAD PIIVHPDVRK MLLTARAYAE
GGRALCVHTA LMLDQELSHP DEAVRRASAD EVALLTPIVK AFLTDNGWIA TSHCLQVFGG
HGYIREWGME QYVRDARINM IYEGTNTIQS LDLLGRKVLA DNGRKLKAFG RRVADLIDEE
GVREDMQEFI NPLADLGDKV NKLTTELGFK AMGNADEVGG AAVDYLRVVG HLVFAYFWAR
MARIALDQQG SGDPFYTAKL HTARFYFAKL LPETASLIRT ARAGVAPLMA MDESMF
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