| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3965 |
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| Symbol | |
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| ID | 6162390 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4445308 |
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| End bp | 4446396 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 641666743 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001792984 |
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| Protein GI | 171060635 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.000185194 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCCGCCT TGCTGGCCGG CCTGCTGCTG CCGCAGGCGC TGCTCGCGCA GGCCGACAAG
GCGGCGACGC GGCCGGCGCT GACCGTCACC ACCGTCACGC CGCAGCCGGC CGAATGGCCG
CAGACGCTGG TCGCCAACGG CAACGTCGCG GCCTGGCAGG AGGCGGTGCT GGGGGCCGAG
ATCGGCGGCC TGGTGCTGAC CGAGGTGGCG GTGGAGGTGG GCGACCGCGT GCGGCGTGGC
CAGGTGCTGG CGCGGCTCGA CGGCGACAGC GTGAAGGCGG AGCTGGCGCA GTCGCGCGCT
GCCGTGGCCG AAGCCGAGGC CACGCTGGCC GAGGCGCGTG GCAATGCCGA CCGGGCCCGC
TCGCTCGCGC CCAGCGGCGT CATCAGCGCG CAGCAGACCG CCCAGGTGCT GACCGCCGAA
CAGACCGCCG CCGCCCGGCT GCAATCGGCC CGTGCCCGGT TACAGGTCGA CGAGCTGCGC
CTGCGCAAGA CCGAACTGAC CGCACCCGAC GACGGGGTGA TCTCGGCCCG CGTGGCCAGC
GTCGGCAGCG TCGTGCAGAG CGGCCAGGAG CTGTTCCGGC TGATCCGCCA GGGCCGCCTC
GAGTGGCGCG CCGAGGTCGG TTCGGCCGAT CTGGCGCGGT TGCAGCCGGG CATGGCGGTG
CAGCTGAGCA CGCCGGCCGG CCAGCGGGTG GCCGGCAAGC TGCGCCGCAT CGCCCCGACC
GTCGACCTGA GCAGCCGCAA CGCGCTGGTC TACGTCGACC TCTCGCCCGG CAGCGATGCG
CGCGCGGGCA TGTACGCGCG CGGCGAGTTC GCGCTCGGGC GCCAGCAGGC GCTCACGCTG
CCGGCTGCGG CGGTGCTGCT GCGCGACGGT TTCCATGTCG TGATGCGGCT GGGCGCCGAC
CACCGCGTCA GCCAGACCAA GGTCACGGTC GGCCAGCGCC TGGGTGAACG CATCGCCGTC
GCCGGCCTGC CGGCCGAGGC CCAGGTGGTG GCGACCGGCG CGGCCTTCCT GGCCGATGGC
GACAGCGTCA AGGTGGTCGG CGCGGTGCCC ACGATCGTGC CGGCGGCCGT GCCGCGGGGC
GCGAAATGA
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| Protein sequence | MPALLAGLLL PQALLAQADK AATRPALTVT TVTPQPAEWP QTLVANGNVA AWQEAVLGAE
IGGLVLTEVA VEVGDRVRRG QVLARLDGDS VKAELAQSRA AVAEAEATLA EARGNADRAR
SLAPSGVISA QQTAQVLTAE QTAAARLQSA RARLQVDELR LRKTELTAPD DGVISARVAS
VGSVVQSGQE LFRLIRQGRL EWRAEVGSAD LARLQPGMAV QLSTPAGQRV AGKLRRIAPT
VDLSSRNALV YVDLSPGSDA RAGMYARGEF ALGRQQALTL PAAAVLLRDG FHVVMRLGAD
HRVSQTKVTV GQRLGERIAV AGLPAEAQVV ATGAAFLADG DSVKVVGAVP TIVPAAVPRG
AK
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