| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3879 |
|---|
| Symbol | |
|---|
| ID | 6163449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 4351966 |
|---|
| End bp | 4353159 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641666657 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_001792898 |
|---|
| Protein GI | 171060549 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1459] Type II secretory pathway, component PulF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCCCAGT TCAACGTCAA GGCCTTGCGC GGCGCCAGCG ACGTGGTCCG GCTTTACATC
GAGGCCGGCG ACGCCGACGA GGCCCGCCGC CTCGCCACGC GGCAGGGCTT GGAGATCCTC
TCGATCCAGG CCGGCAACCC GCTGGCCGGC TGGCACCTGC GACCGCGGCC GAGCTTCGAC
CTCGAGCTGT TCAGCCAAGA GCTCGTCTCG CTGCTCGGCG CCGGCCTGTC GCTGGTCGAG
GCGGTCGACC TGCTGGCCGA GAAGGAAACC GGCCGCAGCG CCGCCGCCGT CCTGACCGAG
CTGCGCACCG ACCTGCACCG CGGCCAGCGC TTTTCCGACG CGCTCGAACA CCACCCCGCG
GTCTTCCCGC CGATGTTCGT CGCCACCGTG CGCGCGTCCG AGCGCACCGG CGACATCCAG
GAGGCCGTGA GCCGTTTCCT CGCCTACCAC CAGCAGCTCG ACCGCATCCG CCGCCGCGTC
GTCTCGGCCT CGGTCTACCC GCTGATGCTG ATGGGCGTGG GGTTGCTCGT CACCGCCTTC
ATGCTGCTGT TCGTGGTGCC CAAGTTCAGC CGCATCTACG AGGAGATCGG TGGCCAGCTG
CCCTTCCTGA CCCGGCTGCT GATCGGCTGG GGCCAGCTGC TCGAAGCCCA TGCGGCGCTA
ACGCTCGGCG TGCTCGCCGG CCTGCTCGGT GCGGCCGTGT TCGCCGCCAG CCGGCCGGCG
GTGCGGCGCT GGATCGGGCC GCAGATCTGG CGCATCCCGG CCATCGGCGA GCGCCTGCGG
GTCTACGAGC TGAGCCGCTT CTACCGCACG CTGGGCATGC TGCTCGACAG CGGCATCGCG
CTGCCCACCG GCCTGGACAT GGCCGGCGGC CTGCTGTCGC CGCTGCTGCG CAGCCGCCTC
GAACAGGCCG CCACGCAGAT CCGCGAAGGC CAGCCGGTGT CGCAGGCCTT CGCCCGCCAC
GGCCTGACCA CCCACGTGTC GCGCCGTCTG CTCGCGGTGG GCGAGCGCAC CGGCCGCATG
CCGCACATGG TCGAGCGCAT CGCGCTGTTC TACGAGGACG AGCTGGCGCG CTCGATCGAC
TGGTTCACGC GCCTGTTCGA GCCCGCGCTG ATGGTGCTGA TCGGCGCGCT GGTGGGCCTG
ATCGTGGTGC TGCTCTACCT GCCGATCTTC GAGCTGGCCG ACAGCATCAA GTAG
|
|---|
| Protein sequence | MAQFNVKALR GASDVVRLYI EAGDADEARR LATRQGLEIL SIQAGNPLAG WHLRPRPSFD
LELFSQELVS LLGAGLSLVE AVDLLAEKET GRSAAAVLTE LRTDLHRGQR FSDALEHHPA
VFPPMFVATV RASERTGDIQ EAVSRFLAYH QQLDRIRRRV VSASVYPLML MGVGLLVTAF
MLLFVVPKFS RIYEEIGGQL PFLTRLLIGW GQLLEAHAAL TLGVLAGLLG AAVFAASRPA
VRRWIGPQIW RIPAIGERLR VYELSRFYRT LGMLLDSGIA LPTGLDMAGG LLSPLLRSRL
EQAATQIREG QPVSQAFARH GLTTHVSRRL LAVGERTGRM PHMVERIALF YEDELARSID
WFTRLFEPAL MVLIGALVGL IVVLLYLPIF ELADSIK
|
|---|
| |