| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3850 |
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| Symbol | |
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| ID | 6162625 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4317906 |
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| End bp | 4318580 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641666623 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_001792869 |
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| Protein GI | 171060520 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGTCA CCGACTCGTC CGTACCGACT CCGCCGCCCG CCACGCCGTG GCGCATCGCC
CTGGCCGACG ACCACGCGAT CGTGCGCGTC GGCTACCGCC GCCTGCTCGA ACTGGAACCC
GACCTGAGCG TGGTGGCCGA ATACGCCGAC GCCGACAGCG CCGCGGCCGA TCTCTGCCAG
GCGCGCCGCA CGGCGGTCGA CCTGCTGATC CTCGACCTCT CGATGCCCGG GCGCAGCGGC
CTGGACCTGC TGCGACAACT GCAGCGCGAC CGGCCGGCGC TGAAGGTGCT GATGGTGTCG
ATGCACGACA GCGCGGCGCT GGTCGGCCAG TGCCTGGGCG CGGGCGCCTG CGGCTTCGTC
GCCAAGAGCA GCGACCCGCA GGCGCTGATC GGCGCGGTGC GCCAGGCTTT GCGCGGCGAG
GTGGTCGACA CGCACGGGCC GTCCGCCCCA CCCCGCGCCG GCCGCCGGCC GCTGCCGCAC
GAACAGCTCA CCGGCCGCGA GCTCGAGGTG CTGCAGCTGC TGCTGGCCGG CCTGGGTGTC
GAGGTGGCGG CCGCGCGCAT CGGCCTGAGC GAAAAGACGG TGTCCAACTA CCAGACCCAG
ATCCGCCAGA AGCTCGGCGT CGCCAACTCG ATCGAGCTGG TGCATTACGC GCGCCAGCAC
GGCCTGATGC CCTGA
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| Protein sequence | MSVTDSSVPT PPPATPWRIA LADDHAIVRV GYRRLLELEP DLSVVAEYAD ADSAAADLCQ
ARRTAVDLLI LDLSMPGRSG LDLLRQLQRD RPALKVLMVS MHDSAALVGQ CLGAGACGFV
AKSSDPQALI GAVRQALRGE VVDTHGPSAP PRAGRRPLPH EQLTGRELEV LQLLLAGLGV
EVAAARIGLS EKTVSNYQTQ IRQKLGVANS IELVHYARQH GLMP
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