| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3702 |
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| Symbol | |
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| ID | 6163357 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4137375 |
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| End bp | 4139966 |
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| Gene Length | 2592 bp |
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| Protein Length | 863 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641666475 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001792721 |
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| Protein GI | 171060372 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.170309 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACA CCGCCGCGCC ACGTGCCCGC ATCCTGATCG TCGACGACGT GCCGGAGAAC
CTGCACGCGC TGATGAACAT CCTGCGCAGC GATCACGCCA TCGTGGCCGC CACCAGCGGC
GAAAAGGCCC TCGCGCTGGC GCGCGCCCAG CCGCAGCCCG ACATGATCCT GCTCGACATC
AAGATGCCGG GCATGGACGG CTATTCGGTG CTGTCGCACC TCAAGGCCGA CCCGGCCACG
GCGGCGATTC CCGTGATCTT CGTCACCGCG CTGACCGAGG CGGCCGACGA GGCGCGCGGC
CTCAAGCTCG GCGTGGCCGA CTACATCACC AAGCCGGTCA ATCCCGACCT GCTGCGCCTG
CGCATCGCCA CCCAGCTCGA GCTGCGGCGC CACCGCCGCC ATCCGCTGCA GGCCGAGATC
GCCTGCGCCC GCGCCGGTAC GCGGCGGCCG ACGCTGCTGG TGGTCGACGA CGTGCCCGAC
AACATCCACG AACTGATCGA GGCGCTGCGC GACGAATACC GCATCACGGT GGCCAGCTCC
GGGCCGAAGG CGCTGCAGAT CGTGCAGGGC GACGACCCGC CCGACCTGGT GCTGCTCGAC
ATCGTGATGC CCGACATGGA CGGCTACGAG GTCTGCCGGC GCATCAAGGC GCTGCCGCTG
GGGCCGCGCC TGCCGGTGAT CTTCGTCACC GTCGTGGACG CCAGCGAGAA GAAGGTGCAG
GGCTTCGGCC TGGGCGCGGC CGACTACATC ACCAAGCCCT TCGACATCGA CGAGGTGCGC
GCCCGCGTGC GCACCCACAT CGAGCTCAGC CGGCTGCAGC GCTGCCTCGA GGAACTGGTG
GCGCAGCGCA CCGCGCTGCT CGAGAAGAGC GAAGAGAAAT ACCGCATCCT GGCCGAGTAC
TCGCCCAACT GGGAATACTG GGTCGCCCCC GACGGCAGCC ACCTGTATGT CTCGCCGGCC
TGCGGCGACG TGTCCGGCTA CAGCCCGGCC GACTTCTTCG CCGATCCGGC GCTGATGGCG
TCGATCATCC ATCCCGACGA CCGCACGCAG TGGGCGGCGC AGCAGGCGCG CGCCGTGCCG
GGCGAAGCCT CGGCCACGGT GCTGCGCATC CGCACCCGCG ACGGCGGCGA GCGCTGGCTC
GAACACGTGG TCAAGCCGGT GTTCAGCCCG GCCGGCCAGC TGCTCGGGCT GCGCGGCTCG
TATGGCGACA TCACGCAGCG CCGCCAGGCC GAGCAGCAGC TCGACTACGT CACCCACCGC
GATGCGCTCA CGGGCCTGCC CAACCGGGCG CTGTTCACCG AGTTCCTCGA TCAGGCGGTG
CAGAAGGCGG CGCACAGCCG CGGCGAGTTC TCGCTGCTGT TCATCAACCT CGACGGCTTC
AAGACCATCA ACGAAAGCCT CGGCCGCAGC GCCGGCGACC AGCTGCTGAT CGAGGTGGCG
CGGCGCCTGC GCGAGCTGCT GCCCGGCGTC GACGCGGTGG CGCGGGTGGG CGGCGACGAG
TTCAACGTCA TCGTCGAGCA CGATGTGGCC GGCCTGGGCA TCGACCTGGT GGCGCAGCGC
ATCATCAATG CGCTGTCGCA CTCGTATCAG CTGGGCGCGC AGTCGGCCTA CATCGGCGCG
TGCATCGGCA TCGCGCAATA CCCGGCCGAC GGCCCGGCGG CCGAATCGCT GCTCAACAGC
GCCGACGCCG CCCTGCACCG CGCCAAGGCG CAGGGCCGCA ACGTGCTGCG CTTCTTCTCG
CCCGAACTGA CCATCCGCGC CCGCGAGCGG CTGTCGCTCG AAGCCGACCT GCGCCGCGCC
TTGCAGCAGG GCGAACTGGC CTTGCACTAC CAGCCGCAGG TCGACCTGCG CAGCGGTCGC
ATCGTCGGTG TCGAGGCGCT GCTGCGCTGG CGGCACCCGC AGCGCGGCTG GATCGCGCCC
GGCGCCTTCA TCCCGCTGGC CGAGGAATGC GGCCTGATCA TCGAGCTGGG CGACTGGGTG
CTGCGCGCCG CCTGCGAGCA GATCCGGCAC TGGTCGGACG CCGGCGTCGC GCCGCGGCAG
ACCGCCGTCA ACATCTCGGC GGTGCAGATC AGCAGCGGGG GCCTGCTCGA CACGGTGCGC
CGCACCCTGG CGGCCACCGG CATCGCGCCC GACCGGCTCG AGCTCGAGAT CACCGAAAGC
TTCGTGATGT TCGAGCGCGA ACGTTCGTTC AAGCTGCTGG CCGATCTGCG GGCGCTGGGG
GTGCAGCTGT CGATCGACGA TTTCGGCACC GGCTACTCGT CGCTGGCCTA CCTGCAGCAG
CTCGAGGTGC ACAAGCTCAA GATCGACATC TCGTTCGTGC GCAACATGAC GCGCAACCGC
GGCAATGCCT CGATCGTCAA GGCGGTGATC GCGATGGGTC ACAGCCTCGG CCTGGAGGTG
ATCGCCGAGG GCGTCGAGGA GATCGAGCAG GCCGCGCACC TGCTCGCGCT GCAATGCGAC
GTGATGCAGG GTTACCTGGT CAGCAAGCCG CTGCCGGTCG ACGACATCAC GCGCCTGCTC
GAGTCGTTCG AGCCGATCGT GATCCCGGTC GACGAGACCC TGGCGATCGG CGGCCTGAAG
CCACAGGCCT GA
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| Protein sequence | MTDTAAPRAR ILIVDDVPEN LHALMNILRS DHAIVAATSG EKALALARAQ PQPDMILLDI
KMPGMDGYSV LSHLKADPAT AAIPVIFVTA LTEAADEARG LKLGVADYIT KPVNPDLLRL
RIATQLELRR HRRHPLQAEI ACARAGTRRP TLLVVDDVPD NIHELIEALR DEYRITVASS
GPKALQIVQG DDPPDLVLLD IVMPDMDGYE VCRRIKALPL GPRLPVIFVT VVDASEKKVQ
GFGLGAADYI TKPFDIDEVR ARVRTHIELS RLQRCLEELV AQRTALLEKS EEKYRILAEY
SPNWEYWVAP DGSHLYVSPA CGDVSGYSPA DFFADPALMA SIIHPDDRTQ WAAQQARAVP
GEASATVLRI RTRDGGERWL EHVVKPVFSP AGQLLGLRGS YGDITQRRQA EQQLDYVTHR
DALTGLPNRA LFTEFLDQAV QKAAHSRGEF SLLFINLDGF KTINESLGRS AGDQLLIEVA
RRLRELLPGV DAVARVGGDE FNVIVEHDVA GLGIDLVAQR IINALSHSYQ LGAQSAYIGA
CIGIAQYPAD GPAAESLLNS ADAALHRAKA QGRNVLRFFS PELTIRARER LSLEADLRRA
LQQGELALHY QPQVDLRSGR IVGVEALLRW RHPQRGWIAP GAFIPLAEEC GLIIELGDWV
LRAACEQIRH WSDAGVAPRQ TAVNISAVQI SSGGLLDTVR RTLAATGIAP DRLELEITES
FVMFERERSF KLLADLRALG VQLSIDDFGT GYSSLAYLQQ LEVHKLKIDI SFVRNMTRNR
GNASIVKAVI AMGHSLGLEV IAEGVEEIEQ AAHLLALQCD VMQGYLVSKP LPVDDITRLL
ESFEPIVIPV DETLAIGGLK PQA
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