Gene Lcho_3611 details

Gene Information

• Locus tag: Lcho_3611
• ID: 6161772
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 4033139
• End bp: 4035025
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 641666384
• Product: TRAP C4-dicarboxylate transport system permease DctM subunit
• Protein accession: YP_001792630
• Protein GI: 171060281
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component
• TIGRFAM ID: [TIGR00786] TRAP transporter, DctM subunit

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 21
• Fosmid unclonability p-value: 0.00421295
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGAACACGG CTGCCCCTGC ATCGGCACCC GCCGTGGCCG CGCCGTTGCG CAGCCGCCTG 
CGGGCGCTCG GCCGTTTCGA CGAGGTGCTG GCGTCCGCCG CGCTGGTGTT GATGACGCTG 
ATCCCGCTGG TCGAGATCCT GTTGCGCCCG CTGCTCGGCC GCGGCGTCGA GAACGCACCG 
GTGCTGGTTC AGCACCTCGG CCTGGTGCTG GCGATGTTCG GCGCCGTGGC GGCCGAGCGC 
CACGGCCATC TGACGACGCT GGGCAGCGGC CTGGCCCGGC TCGGTGGCGC GCGTGTGCAG 
GCCGCCGTGC GGCTGTTTGC CCACGGCGGC GCGGCGCTGA TCTGCGGCCT GCTGGCGCTG 
GCGAGCTGGC GCTTCGTGGC CAGCGAGATC GAGGTCGCGC ACGAGCTGGC CTACGGCCTG 
CGCCTGTGGT GGGTCGAGGC GGCGATGCCG GTCGGCTTCG TGCTGCTGGG CCTCAAGCTC 
GGCAGCCGCT GTTTTTCCAG CCGGCTGCGG TGGGTCAGCG CGGTCGCCCT GCCGGCGATC 
GGCTACGCGC TGGCCTGGCA GTTCGATGGC GAGAGCCTGA TGCTGTGGCC GGCGCTGCTC 
GTGCTGCTGG CGCTGCTGCT GGCCGGCGCG CCGATCTTCG CGGTGCTGGG CGGCCTGGCG 
CTGGCGCTGT TCTGGCAGGA CGCGCTGCCG CTGGCGTCGA TCCCGCTGTC GCACTACCAG 
ATCACCGTCA ACCCGTCGCT GCCGGCGTTG CCGCTGTTCA CGCTGGCCGG GCTGATCTTC 
GCGCGCACCG GCGCGGCGCA GCGGCTGGGC GCGGTGTTCA CGGCGCTGTT CGGCGGCGGC 
GTCACCGGCA CGGTGGTGGC CGCGGCGGTG CTGTGTTCGT TCTTCACCGC GTTGACCGGC 
GGCAGCGGCG TGACCATCCT TGCGCTCGGC GGCCTGCTGC TGCCGCTGCT GCGCAACGCC 
GGTTTCCCCG AGCGGCGCGG CATCGGCCTC GTCACCAGCG CCAGCGCGCT GGGCGTGCTG 
CTGGCGCCGT CGGTGCCGCT GATCATGTAC GCCATCATCG CGCGGGTGCC GATCAACACG 
ATGTTCGTCG CCGGCCTGCT GCCGGCCGCG GTGATGGTGG CCTTCCTGCT GGTGTTTGGC 
GGCTACCTGC GGCGTGGCGC TCGCACCGAT TCCGCCCAAG CCGCCGACGT CACCGTCACC 
CGAGCGCCGG ACCTGGCTGC GCCGCGCGTG CGGGCCGCGG CCTGGGCGGC CAAATGGGAG 
ATCCTGGCGC CGGTGGTGGC GATCGGCTCG CTCGCCAGCG GCCTGGCCAC GCCCACCGAA 
AGCGCCGCGC TGACCGCCGC CTACGCGGTG CTGACGCAGG CCGTGGCGCA CCGCGAGCTG 
GGTGCGCGCC TGTTGGCTCA GTGCCTGAGC CACTGCGCGC AGGTGATCGG CGGCGTGATG 
CTGATCCTGG GCATGGCGCT GGGGCTGACC AACTTCCTGG TCGACGCCGG CATCCCCGAT 
GCGGCGATCG AGTGGGTGCA GGGCGTCATC CCCAACCGCT TCGTGTTCCT GCTCGCGCTG 
ACCGCCTTCC TGTTCGTGGC CGGCGCGCTG ATGGAGATCT ACGCCGCGCT GGTGGTGCTG 
GTGCCGCTGC TGCTGCCGGT GGCGCTGAGC TACGGCATCG ACCCGGTGCA CTTCGGCATC 
ATCTTCCTGG CCGGCATGGA GATGGGTTTC CTGTGTCCGC CGGCGGGCAT GAACATCTAC 
TTCGCCTCGG CCATGTTCGG CAAGCCGATC CACTACGTGG CGGCCTCGGT GCTGCCGGCG 
CTGCTGGCGA TCTTTCTGGG CACGCTGGCG ATCGCGTGGC TGCCGCTGCT CGCCACCGGC 
CTGCCGGCGC TGCTGGGCCT GCGCTGA 

 

Protein sequence

MNTAAPASAP AVAAPLRSRL RALGRFDEVL ASAALVLMTL IPLVEILLRP LLGRGVENAP 
VLVQHLGLVL AMFGAVAAER HGHLTTLGSG LARLGGARVQ AAVRLFAHGG AALICGLLAL 
ASWRFVASEI EVAHELAYGL RLWWVEAAMP VGFVLLGLKL GSRCFSSRLR WVSAVALPAI 
GYALAWQFDG ESLMLWPALL VLLALLLAGA PIFAVLGGLA LALFWQDALP LASIPLSHYQ 
ITVNPSLPAL PLFTLAGLIF ARTGAAQRLG AVFTALFGGG VTGTVVAAAV LCSFFTALTG 
GSGVTILALG GLLLPLLRNA GFPERRGIGL VTSASALGVL LAPSVPLIMY AIIARVPINT 
MFVAGLLPAA VMVAFLLVFG GYLRRGARTD SAQAADVTVT RAPDLAAPRV RAAAWAAKWE 
ILAPVVAIGS LASGLATPTE SAALTAAYAV LTQAVAHREL GARLLAQCLS HCAQVIGGVM 
LILGMALGLT NFLVDAGIPD AAIEWVQGVI PNRFVFLLAL TAFLFVAGAL MEIYAALVVL 
VPLLLPVALS YGIDPVHFGI IFLAGMEMGF LCPPAGMNIY FASAMFGKPI HYVAASVLPA 
LLAIFLGTLA IAWLPLLATG LPALLGLR